Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AB9L17_RS03585 Genome accession   NZ_CP168124
Coordinates   728802..729476 (+) Length   224 a.a.
NCBI ID   WP_068986512.1    Uniprot ID   -
Organism   Bacillus sp. RS11     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 723802..734476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9L17_RS03570 (AB9L17_03570) - 725614..726681 (-) 1068 WP_068986515.1 LCP family protein -
  AB9L17_RS03575 (AB9L17_03575) - 726823..727458 (-) 636 WP_375200105.1 YigZ family protein -
  AB9L17_RS03580 (AB9L17_03580) degS 727624..728763 (+) 1140 WP_068986513.1 sensor histidine kinase Regulator
  AB9L17_RS03585 (AB9L17_03585) degU 728802..729476 (+) 675 WP_068986512.1 response regulator transcription factor Regulator
  AB9L17_RS03590 (AB9L17_03590) - 729738..730283 (+) 546 WP_068986511.1 AtzH-like domain-containing protein -
  AB9L17_RS03595 (AB9L17_03595) - 730539..731381 (+) 843 WP_375200106.1 DegV family protein -
  AB9L17_RS03600 (AB9L17_03600) - 731506..731847 (-) 342 WP_375200107.1 hypothetical protein -
  AB9L17_RS03605 (AB9L17_03605) - 731814..733181 (+) 1368 WP_375200108.1 DEAD/DEAH box helicase -
  AB9L17_RS03610 (AB9L17_03610) - 733178..733768 (+) 591 WP_068986508.1 ComF family protein -
  AB9L17_RS03615 (AB9L17_03615) - 733850..734263 (+) 414 WP_068986507.1 TIGR03826 family flagellar region protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25195.61 Da        Isoelectric Point: 4.9093

>NTDB_id=1042404 AB9L17_RS03585 WP_068986512.1 728802..729476(+) (degU) [Bacillus sp. RS11]
MTKIIIVDDHQLFREGVKRILDFEDTFDVVAEGDDGADVVSLYAENQPDVVLMDINMPGKNGVEATADLISEYPDAKVIM
LSIHDDETYVTHALKSGSLGYMLKEMDADEIVEAIKVVANGGSYLHPKVTKNLVAEFRRLSEHENKGNFHQTEIRRPFHL
LTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMNVNDRTQAVVTAIKNGWVEVR

Nucleotide


Download         Length: 675 bp        

>NTDB_id=1042404 AB9L17_RS03585 WP_068986512.1 728802..729476(+) (degU) [Bacillus sp. RS11]
ATGACGAAGATTATTATTGTAGACGATCACCAGCTATTCCGCGAAGGAGTAAAACGTATTTTAGATTTTGAAGATACGTT
TGATGTAGTGGCAGAAGGTGATGATGGTGCGGATGTGGTGTCATTATATGCTGAAAATCAACCAGATGTTGTACTAATGG
ATATTAATATGCCGGGTAAAAATGGAGTAGAAGCTACGGCAGATTTAATTAGTGAATACCCAGATGCAAAGGTTATTATG
TTATCAATTCATGATGATGAAACATATGTAACACACGCGCTAAAATCGGGATCACTTGGTTATATGCTAAAAGAGATGGA
TGCTGACGAAATTGTTGAAGCTATTAAAGTAGTTGCAAATGGTGGATCTTATCTACATCCAAAGGTAACTAAAAATTTAG
TAGCGGAATTCCGTCGTCTTTCTGAGCATGAAAATAAAGGGAATTTCCATCAAACAGAAATTCGTCGACCATTCCATTTA
CTAACAAAACGTGAATGTGAAGTATTACAATTATTAACAGATGGTCAATCTAACCGTACAATTGGTGAGACATTGTTTAT
TTCTGAAAAAACAGTTAAAAACCACGTTTCAAGCATTTTACAAAAAATGAATGTAAACGACCGCACACAAGCCGTTGTTA
CAGCTATCAAAAACGGCTGGGTTGAAGTACGTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(160-215)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

71.429

100

0.737

Multiple sequence alignment