Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   AB9L17_RS03580 Genome accession   NZ_CP168124
Coordinates   727624..728763 (+) Length   379 a.a.
NCBI ID   WP_068986513.1    Uniprot ID   -
Organism   Bacillus sp. RS11     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 722624..733763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9L17_RS03565 (AB9L17_03565) - 723724..724797 (+) 1074 WP_068986516.1 glycosyltransferase family 4 protein -
  AB9L17_RS03570 (AB9L17_03570) - 725614..726681 (-) 1068 WP_068986515.1 LCP family protein -
  AB9L17_RS03575 (AB9L17_03575) - 726823..727458 (-) 636 WP_375200105.1 YigZ family protein -
  AB9L17_RS03580 (AB9L17_03580) degS 727624..728763 (+) 1140 WP_068986513.1 sensor histidine kinase Regulator
  AB9L17_RS03585 (AB9L17_03585) degU 728802..729476 (+) 675 WP_068986512.1 response regulator transcription factor Regulator
  AB9L17_RS03590 (AB9L17_03590) - 729738..730283 (+) 546 WP_068986511.1 AtzH-like domain-containing protein -
  AB9L17_RS03595 (AB9L17_03595) - 730539..731381 (+) 843 WP_375200106.1 DegV family protein -
  AB9L17_RS03600 (AB9L17_03600) - 731506..731847 (-) 342 WP_375200107.1 hypothetical protein -
  AB9L17_RS03605 (AB9L17_03605) - 731814..733181 (+) 1368 WP_375200108.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 43800.29 Da        Isoelectric Point: 5.4390

>NTDB_id=1042403 AB9L17_RS03580 WP_068986513.1 727624..728763(+) (degS) [Bacillus sp. RS11]
MFSTDTFDLKSLDDIFNRMIDTIMSSKDDIFIISEQNRRNFEDMQKELEIVREQVSIVIDEGDSLEKSTQLAKQRLVLVS
KAFDKYTEEQVREAYETAQDFQVKLSVIRTQEKQLRDKRDDLERRLRGLLDTIERADQIVNQVNVVLNYLTSDLKNVGLA
LEQAKMKQDFGIRIIAAQEEERKRLSREIHDGPAQMLANVLMRTDLIDRTYREKGIESALAEIVDLKKTVRNALTEVRRI
IYDLRPMALDDLGIVPTLKKYVSTVTEYNPGVEVHFQSRSTEKRIPSNYEVSIFRLVQECVTNAMKHGKCKEIWVKLEWL
NNAVNIVVKDDGIGFDPQVVKDHSFGILGMKERIEILDGTISIKSEINRGTTVLFKIPL

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=1042403 AB9L17_RS03580 WP_068986513.1 727624..728763(+) (degS) [Bacillus sp. RS11]
ATGTTTTCAACTGATACCTTCGATTTAAAGTCGCTTGATGACATATTTAATCGAATGATAGATACAATCATGAGCTCAAA
AGATGATATCTTTATTATAAGTGAACAAAACCGAAGAAATTTCGAAGATATGCAAAAAGAGCTAGAAATTGTTCGAGAAC
AAGTTTCAATTGTGATTGATGAAGGTGATTCTTTAGAAAAAAGTACCCAGCTTGCTAAGCAAAGACTTGTGCTAGTGAGT
AAAGCTTTTGATAAATATACCGAAGAACAAGTTCGAGAAGCATATGAAACTGCACAAGATTTTCAAGTGAAGCTCTCCGT
GATTAGAACTCAAGAAAAACAGCTGCGCGATAAAAGAGATGATCTAGAGAGAAGATTAAGAGGGTTACTCGATACGATAG
AACGAGCAGATCAGATTGTCAATCAAGTAAATGTCGTTTTGAATTACTTAACTTCAGATTTGAAAAATGTTGGTTTAGCA
CTTGAACAAGCAAAAATGAAACAAGACTTTGGTATACGTATTATCGCGGCGCAAGAAGAAGAGCGGAAACGTTTATCTAG
GGAAATTCATGATGGGCCTGCTCAGATGCTGGCAAATGTACTAATGCGCACGGATTTAATAGATAGAACGTATCGTGAGA
AGGGCATTGAATCTGCTTTAGCTGAAATTGTTGATTTAAAGAAAACGGTGCGTAATGCATTAACAGAGGTGCGACGTATT
ATTTATGATCTAAGACCAATGGCACTTGATGATTTGGGAATTGTCCCGACATTAAAGAAGTACGTATCGACAGTGACTGA
ATATAATCCTGGTGTTGAAGTTCATTTCCAATCGAGAAGCACCGAAAAGCGTATACCATCAAACTATGAAGTGTCTATTT
TCCGATTAGTGCAAGAATGTGTAACTAATGCTATGAAGCACGGGAAATGTAAGGAGATTTGGGTAAAACTTGAGTGGTTG
AACAATGCCGTAAATATCGTTGTAAAGGATGATGGTATAGGTTTCGATCCACAGGTAGTTAAAGATCATTCCTTTGGGAT
TTTAGGAATGAAAGAACGTATCGAAATTTTGGATGGTACAATTTCCATTAAAAGTGAGATAAATCGAGGGACGACGGTAT
TATTTAAAATTCCGTTATGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(290-379)

Histidine kinase (HisKA_3)

(181-249)

Sensor protein DegS (DegS)

(13-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

53.175

99.736

0.53

Multiple sequence alignment