Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABQF78_RS05230 Genome accession   NZ_CP168120
Coordinates   1235376..1236770 (-) Length   464 a.a.
NCBI ID   WP_070690014.1    Uniprot ID   -
Organism   Xanthomonas campestris strain WHRI 10255     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1229922..1241712 1235376..1236770 within 0


Gene organization within MGE regions


Location: 1229922..1241712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQF78_RS05205 (ABQF78_005205) pilC 1229922..1231181 (-) 1260 WP_070690003.1 type II secretion system F family protein Machinery gene
  ABQF78_RS05210 (ABQF78_005210) pilA2 1231534..1231953 (+) 420 WP_070690005.1 pilin Machinery gene
  ABQF78_RS05215 (ABQF78_005215) pilB 1232196..1233902 (+) 1707 WP_176748120.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABQF78_RS05220 (ABQF78_005220) - 1234085..1234822 (-) 738 WP_070690009.1 zeta toxin family protein -
  ABQF78_RS05225 (ABQF78_005225) - 1234822..1235184 (-) 363 WP_217694196.1 hypothetical protein -
  ABQF78_RS05230 (ABQF78_005230) pilR 1235376..1236770 (-) 1395 WP_070690014.1 sigma-54 dependent transcriptional regulator Regulator
  ABQF78_RS05235 (ABQF78_005235) - 1236979..1238589 (-) 1611 WP_070690016.1 PAS domain-containing sensor histidine kinase -
  ABQF78_RS05240 (ABQF78_005240) sucC 1238823..1239992 (+) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  ABQF78_RS05245 (ABQF78_005245) sucD 1240017..1240892 (+) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  ABQF78_RS05250 (ABQF78_005250) - 1240996..1241406 (+) 411 WP_029628876.1 CopG family ribbon-helix-helix protein -
  ABQF78_RS05255 (ABQF78_005255) - 1241410..1241712 (+) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50265.64 Da        Isoelectric Point: 6.3588

>NTDB_id=1042367 ABQF78_RS05230 WP_070690014.1 1235376..1236770(-) (pilR) [Xanthomonas campestris strain WHRI 10255]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1042367 ABQF78_RS05230 WP_070690014.1 1235376..1236770(-) (pilR) [Xanthomonas campestris strain WHRI 10255]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAACTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATTACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGTGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGGAGCTTTACCGGCGCGCATGCCGACAAGCCCGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTACCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCGGGCGAGACGCTGGTGGACGTGCGCATCCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAGCTGCGCGTGCCGCCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCCGTGGTCGACATCGATCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGGTGGAACAAGACCAGAACTGCCGCGCAGCTAGGCATCACGTTTCGTGCGC
TGCGCTACAAGCTCAAGAAATTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491

Multiple sequence alignment