Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   ABWV92_RS08555 Genome accession   NZ_AP028322
Coordinates   1817731..1818306 (-) Length   191 a.a.
NCBI ID   WP_002496517.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain KSE124-2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1812731..1823306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWV92_RS08515 (KSE1242_16480) - 1812870..1813085 (+) 216 WP_001831694.1 NINE protein -
  ABWV92_RS08520 - 1813189..1813305 (+) 117 WP_002486587.1 SAR1012 family small protein -
  ABWV92_RS08525 (KSE1242_16490) - 1813740..1813898 (+) 159 WP_002446129.1 replication/maintenance protein RepL -
  ABWV92_RS08530 (KSE1242_16500) - 1813968..1814585 (-) 618 WP_002458044.1 LysE family transporter -
  ABWV92_RS08535 (KSE1242_16510) - 1814589..1815536 (-) 948 WP_002458043.1 fatty acid desaturase family protein -
  ABWV92_RS08540 mobV 1815597..1816776 (-) 1180 Protein_1648 MobV family relaxase -
  ABWV92_RS08555 (KSE1242_16540) comK/comK1 1817731..1818306 (-) 576 WP_002496517.1 competence protein ComK Regulator
  ABWV92_RS08560 (KSE1242_16550) - 1818521..1818739 (+) 219 WP_001829292.1 IDEAL domain-containing protein -
  ABWV92_RS08565 (KSE1242_16560) - 1818817..1819803 (-) 987 WP_002496518.1 lipoate--protein ligase -
  ABWV92_RS08570 (KSE1242_16570) - 1820008..1820193 (+) 186 WP_001829339.1 DUF2187 family protein -
  ABWV92_RS08575 (KSE1242_16580) - 1820199..1820801 (+) 603 WP_001829312.1 CPBP family glutamic-type intramembrane protease -
  ABWV92_RS08580 (KSE1242_16590) - 1820904..1822409 (-) 1506 WP_002458038.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22752.89 Da        Isoelectric Point: 9.4712

>NTDB_id=104236 ABWV92_RS08555 WP_002496517.1 1817731..1818306(-) (comK/comK1) [Staphylococcus epidermidis strain KSE124-2]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGNNYISKKAETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFEVN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=104236 ABWV92_RS08555 WP_002496517.1 1817731..1818306(-) (comK/comK1) [Staphylococcus epidermidis strain KSE124-2]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
GACAAATGGTACTGAGATTATCAGATTTGATCAAACCCGCAAAGAAAGTCCATTTAAAGTACAGAGAATTATCGAAAGAT
CATGTAAGTTTTATGGCAATAATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATTTCTAGTAAACCACCT
ATTTTACTTACACCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCGGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGTAAGAGTAAAATAATTTTTGCGAATGGTGATTCTTTAACACTCA
ATGTATCATTTCATAGTTTGTGGCATCAATACACCAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCCATTGACTATAATCAGTCCTCTTTAAATATTTTCGAGGCGCTTTCACGCTACTCTCT
TTTTGAAGTAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

77.174

96.335

0.743
  comK/comK1 Staphylococcus aureus N315

77.174

96.335

0.743

Multiple sequence alignment