Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ABWV92_RS07600 Genome accession   NZ_AP028322
Coordinates   1613051..1613923 (-) Length   290 a.a.
NCBI ID   WP_145333739.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain KSE124-2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1608051..1618923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWV92_RS07585 (KSE1242_14660) xerC 1608353..1609243 (-) 891 WP_002457368.1 tyrosine recombinase XerC -
  ABWV92_RS07590 (KSE1242_14670) trmFO 1609467..1610774 (-) 1308 WP_002473845.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ABWV92_RS07595 (KSE1242_14680) topA 1610799..1612868 (-) 2070 WP_145333737.1 type I DNA topoisomerase -
  ABWV92_RS07600 (KSE1242_14690) dprA 1613051..1613923 (-) 873 WP_145333739.1 DNA-processing protein DprA Machinery gene
  ABWV92_RS07605 - 1614248..1614463 (-) 216 Protein_1462 transposase -
  ABWV92_RS07610 (KSE1242_14700) sucD 1614714..1615622 (-) 909 WP_145333741.1 succinate--CoA ligase subunit alpha -
  ABWV92_RS07615 (KSE1242_14710) sucC 1615644..1616810 (-) 1167 WP_002439496.1 ADP-forming succinate--CoA ligase subunit beta -
  ABWV92_RS07620 (KSE1242_14720) - 1616918..1617688 (-) 771 WP_002496448.1 ribonuclease HII -
  ABWV92_RS07625 (KSE1242_14730) ylqF 1617693..1618556 (-) 864 WP_002491374.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33874.98 Da        Isoelectric Point: 9.6746

>NTDB_id=104235 ABWV92_RS07600 WP_145333739.1 1613051..1613923(-) (dprA) [Staphylococcus epidermidis strain KSE124-2]
MIQHTMLKLYWANFTTAQLHHLTRKYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKKLKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTCQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYFLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPINKYKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILIDYLF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=104235 ABWV92_RS07600 WP_145333739.1 1613051..1613923(-) (dprA) [Staphylococcus epidermidis strain KSE124-2]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACACGTAAATATCC
CGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGACTAT
GGAACAAATATGAACGTTTCAAAAAATTAAAGCTAATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACG
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTCTAGCTGTAATTGGCTCACGTAATGCCACACAATATACTTGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGTGGCGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACTTTTTACCAACTATTGGCGTACTTGGATTTGGACATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGAAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCCATAAATAAGTATAAATTTC
CTGAAAGAAACAGACTTATAAGTGGTCTGTCTAGAGGGGTTCTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATT
ACTATTGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGCAA
TTTACGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATCTTAATTGATTATCTATTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

57.639

99.31

0.572
  dprA Staphylococcus aureus N315

57.639

99.31

0.572

Multiple sequence alignment