Detailed information NTG1042337

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACCE15_RS20650
• Genome accession: NZ_CP168118
• Coordinates: 4612838..4613704 (+)
• Length: 288 a.a.
• NCBI ID: WP_372821517.1
• Uniprot ID: -
• Organism: Pseudomonas parafulva strain SE729
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4607838..4618704

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACCE15_RS20630 (ACCE15_20630)	-	4609362..4610684 (-)	1323	WP_372821514.1	tyrosine-type recombinase/integrase	-
ACCE15_RS20640 (ACCE15_20640)	-	4610974..4611414 (-)	441	WP_372821515.1	pilin	-
ACCE15_RS20645 (ACCE15_20645)	-	4611628..4612836 (+)	1209	WP_372821516.1	type II secretion system F family protein	-
ACCE15_RS20650 (ACCE15_20650)	pilD	4612838..4613704 (+)	867	WP_372821517.1	A24 family peptidase	Machinery gene
ACCE15_RS20655 (ACCE15_20655)	coaE	4613704..4614327 (+)	624	WP_054895241.1	dephospho-CoA kinase	-
ACCE15_RS20660 (ACCE15_20660)	yacG	4614324..4614524 (+)	201	WP_054895240.1	DNA gyrase inhibitor YacG	-
ACCE15_RS20665 (ACCE15_20665)	-	4614609..4615304 (-)	696	WP_065863330.1	energy-coupling factor ABC transporter permease	-
ACCE15_RS20670 (ACCE15_20670)	-	4615417..4616046 (+)	630	WP_065863331.1	DUF1780 domain-containing protein	-
ACCE15_RS20675 (ACCE15_20675)	-	4616190..4616363 (+)	174	WP_054895237.1	DUF3094 family protein	-
ACCE15_RS20680 (ACCE15_20680)	-	4616448..4617743 (+)	1296	WP_125930741.1	NAD(P)/FAD-dependent oxidoreductase	-
ACCE15_RS20685 (ACCE15_20685)	phnN	4617848..4618408 (-)	561	WP_372821518.1	phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31595.55 Da
• Isoelectric Point: 7.2856

>NTDB_id=1042337 ACCE15_RS20650 WP_372821517.1 4612838..4613704(+) (pilD) [Pseudomonas parafulva strain SE729]
MNLWTFLADQPGFFLASAAVLGLLVGSFLNVLVHRLPVMLERQWQNEAREVLGLPVEAHERFDLCLPASHCPGCGHRIRA
WENIPVVSYLAQRGRCSACKGRISLRYPLVELACAGLSLVVAWHFGVSVQALLALVLTWCLLALSLIDAEHQLLPDVLVL
PTLWLGLVVNAFGVFVPLADALWGAVVGYLSLWSVYWLFRLVTGKEGLGYGDFKLLALLGAWGGWQVLPLTLLLSSVVGA
VIGLCLLRLRKASLGATMPFGPYLAIAGWIAWLWGDEIYASYMQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=1042337 ACCE15_RS20650 WP_372821517.1 4612838..4613704(+) (pilD) [Pseudomonas parafulva strain SE729]
ATGAATCTGTGGACTTTTCTTGCCGACCAGCCAGGGTTCTTCCTGGCGAGTGCAGCCGTGCTCGGGCTGCTGGTGGGCAG
TTTTCTGAATGTGCTGGTACATCGGTTGCCGGTGATGCTCGAACGCCAGTGGCAGAACGAGGCGCGTGAAGTATTGGGGC
TGCCGGTGGAGGCGCATGAGCGTTTCGACCTGTGCCTGCCGGCCTCGCACTGCCCGGGCTGCGGGCATCGGATTCGGGCG
TGGGAAAACATTCCGGTGGTGAGTTACCTGGCCCAGCGTGGGCGCTGCTCGGCGTGCAAGGGGCGGATCAGCCTGCGTTA
TCCGCTGGTGGAACTGGCCTGCGCGGGGCTGTCGCTGGTGGTGGCGTGGCATTTCGGGGTGAGCGTGCAGGCGCTGTTGG
CGCTGGTGCTGACGTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCGGAGCATCAATTGCTGCCGGATGTGCTGGTGCTG
CCGACGCTGTGGCTGGGGCTGGTGGTCAATGCCTTCGGGGTGTTCGTGCCGTTGGCCGATGCGCTGTGGGGGGCGGTGGT
CGGTTACCTGAGCCTATGGTCGGTGTATTGGCTGTTTCGGCTGGTCACCGGCAAGGAGGGCCTGGGCTATGGCGATTTCA
AGCTGCTGGCGCTGCTGGGCGCCTGGGGCGGCTGGCAAGTGCTGCCGCTGACACTGTTGCTGTCGTCGGTAGTGGGGGCG
GTGATCGGGCTGTGTCTGCTGCGGCTGCGCAAGGCTTCGCTGGGGGCGACGATGCCTTTTGGGCCCTATCTGGCAATTGC
GGGCTGGATCGCATGGCTCTGGGGTGATGAAATATACGCTTCTTACATGCAACTGCTCGGATACTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.347	96.181	0.503
pilD	Acinetobacter baumannii D1279779	50	97.222	0.486
pilD	Acinetobacter nosocomialis M2	49.286	97.222	0.479
pilD	Vibrio campbellii strain DS40M4	49.815	94.097	0.469
pilD	Neisseria gonorrhoeae MS11	48.327	93.403	0.451