Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACCE15_RS17075 Genome accession   NZ_CP168118
Coordinates   3849486..3850121 (-) Length   211 a.a.
NCBI ID   WP_054893125.1    Uniprot ID   A0AAD0PE55
Organism   Pseudomonas parafulva strain SE729     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3844486..3855121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCE15_RS17045 (ACCE15_17045) murB 3845592..3846611 (-) 1020 WP_112897749.1 UDP-N-acetylmuramate dehydrogenase -
  ACCE15_RS17050 (ACCE15_17050) - 3846608..3847072 (-) 465 WP_125930436.1 low molecular weight protein-tyrosine-phosphatase -
  ACCE15_RS17055 (ACCE15_17055) kdsB 3847072..3847836 (-) 765 WP_125930437.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACCE15_RS17060 (ACCE15_17060) - 3847833..3848018 (-) 186 WP_054893060.1 Trm112 family protein -
  ACCE15_RS17065 (ACCE15_17065) lpxK 3848060..3849055 (-) 996 WP_125930438.1 tetraacyldisaccharide 4'-kinase -
  ACCE15_RS17070 (ACCE15_17070) - 3849055..3849489 (-) 435 WP_054893058.1 biopolymer transporter ExbD -
  ACCE15_RS17075 (ACCE15_17075) exbB 3849486..3850121 (-) 636 WP_054893125.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACCE15_RS17080 (ACCE15_17080) comA 3850232..3852454 (-) 2223 WP_372821227.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACCE15_RS17085 (ACCE15_17085) - 3852597..3853223 (+) 627 WP_151924181.1 DUF2062 domain-containing protein -
  ACCE15_RS17090 (ACCE15_17090) - 3853107..3853886 (-) 780 WP_054893055.1 ABC transporter permease -
  ACCE15_RS17095 (ACCE15_17095) - 3853883..3854815 (-) 933 WP_063543816.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22831.12 Da        Isoelectric Point: 7.3616

>NTDB_id=1042335 ACCE15_RS17075 WP_054893125.1 3849486..3850121(-) (exbB) [Pseudomonas parafulva strain SE729]
MWELVKSGGWMMLPIILSSVAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1042335 ACCE15_RS17075 WP_054893125.1 3849486..3850121(-) (exbB) [Pseudomonas parafulva strain SE729]
GTGTGGGAATTGGTCAAGTCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCCGTCGCAGCCATGGCAATTGTCGT
CGAGCGCCTGTGGACCCTGCGTGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTATGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCTTGCGCGCCGACTCCCCCTTGGGCGAGATTCTCGCCGCAGGCCTGGCAAAC
TCCCGCCATGGCCGCGAGATCATGAAGGAATGCATCGAGGAGGCCGCTTCCCGGGTCATCCACGAGCTCGAGCGCTACAT
CAGCACCCTGGGTACCATCGCTGCAATGGCGCCGTTGCTAGGTCTGCTTGGCACCGTACTTGGCATGATCGACATCTTCA
GTGCGTTCATGGGCTCGCAGATGACCGCTAACGCCGCGGTGCTCGCCGGGGGTATTTCCAAGGCGCTGGTGACCACCGCA
GCGGGCCTGATGGTTGGTATCCCCGCCGTATTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTCGAGGTGCTGCAGGGCGACCGCGAGGTCGAGGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment