Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | ABQF06_RS05215 | Genome accession | NZ_CP168117 |
| Coordinates | 1244614..1246008 (-) | Length | 464 a.a. |
| NCBI ID | WP_012437607.1 | Uniprot ID | - |
| Organism | Xanthomonas campestris pv. campestris strain WHRI 8955 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1193549..1250950 | 1244614..1246008 | within | 0 |
Gene organization within MGE regions
Location: 1193549..1250950
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABQF06_RS04985 (ABQF06_004985) | - | 1195025..1196305 (+) | 1281 | WP_228442796.1 | SidA/IucD/PvdA family monooxygenase | - |
| ABQF06_RS04990 (ABQF06_004990) | - | 1196359..1196610 (+) | 252 | WP_228442797.1 | hypothetical protein | - |
| ABQF06_RS04995 (ABQF06_004995) | - | 1197029..1197406 (-) | 378 | WP_228442798.1 | hypothetical protein | - |
| ABQF06_RS05000 (ABQF06_005000) | - | 1197403..1197717 (-) | 315 | WP_228442799.1 | hypothetical protein | - |
| ABQF06_RS05005 (ABQF06_005005) | - | 1197774..1198535 (-) | 762 | WP_228442800.1 | hypothetical protein | - |
| ABQF06_RS05010 (ABQF06_005010) | - | 1198697..1198978 (+) | 282 | WP_373046018.1 | helix-turn-helix domain-containing protein | - |
| ABQF06_RS05015 (ABQF06_005015) | dndC | 1199148..1200278 (+) | 1131 | WP_228442802.1 | DNA phosphorothioation system sulfurtransferase DndC | - |
| ABQF06_RS05020 (ABQF06_005020) | - | 1200300..1200515 (+) | 216 | WP_082346685.1 | DNA modification system-associated small protein | - |
| ABQF06_RS05025 (ABQF06_005025) | dndD | 1200505..1202583 (+) | 2079 | WP_228442803.1 | DNA sulfur modification protein DndD | - |
| ABQF06_RS05030 (ABQF06_005030) | - | 1202585..1204114 (+) | 1530 | WP_228442804.1 | ATP-binding protein | - |
| ABQF06_RS05035 (ABQF06_005035) | - | 1204147..1204482 (+) | 336 | WP_228442805.1 | hypothetical protein | - |
| ABQF06_RS05040 (ABQF06_005040) | - | 1204666..1206066 (-) | 1401 | WP_228442806.1 | site-specific integrase | - |
| ABQF06_RS05045 (ABQF06_005045) | - | 1206614..1206838 (+) | 225 | WP_053051249.1 | hypothetical protein | - |
| ABQF06_RS05050 (ABQF06_005050) | - | 1207235..1207714 (+) | 480 | WP_053051250.1 | RadC family protein | - |
| ABQF06_RS05055 (ABQF06_005055) | - | 1207964..1208623 (+) | 660 | WP_228442836.1 | DUF1629 domain-containing protein | - |
| ABQF06_RS05060 (ABQF06_005060) | - | 1208660..1212652 (+) | 3993 | WP_228442807.1 | hypothetical protein | - |
| ABQF06_RS05065 (ABQF06_005065) | - | 1212694..1213344 (+) | 651 | WP_228442808.1 | hypothetical protein | - |
| ABQF06_RS05070 (ABQF06_005070) | - | 1213713..1214252 (+) | 540 | WP_228442809.1 | hypothetical protein | - |
| ABQF06_RS05075 (ABQF06_005075) | - | 1214252..1215493 (+) | 1242 | WP_228442810.1 | DGQHR domain-containing protein | - |
| ABQF06_RS05080 (ABQF06_005080) | - | 1215521..1216651 (+) | 1131 | WP_349765623.1 | ParB N-terminal domain-containing protein | - |
| ABQF06_RS05085 (ABQF06_005085) | - | 1216920..1217249 (-) | 330 | WP_228442812.1 | hypothetical protein | - |
| ABQF06_RS05090 (ABQF06_005090) | - | 1217516..1219111 (+) | 1596 | WP_228442813.1 | MobA/MobL family protein | - |
| ABQF06_RS05095 (ABQF06_005095) | - | 1219164..1219505 (-) | 342 | WP_228442814.1 | hypothetical protein | - |
| ABQF06_RS05100 (ABQF06_005100) | - | 1220334..1220588 (+) | 255 | WP_228442815.1 | hypothetical protein | - |
| ABQF06_RS05105 (ABQF06_005105) | - | 1220879..1221109 (-) | 231 | WP_181920809.1 | hypothetical protein | - |
| ABQF06_RS05110 (ABQF06_005110) | - | 1221173..1221319 (+) | 147 | WP_076054137.1 | hypothetical protein | - |
| ABQF06_RS05115 (ABQF06_005115) | - | 1221503..1221898 (+) | 396 | WP_042594933.1 | hypothetical protein | - |
| ABQF06_RS05120 (ABQF06_005120) | - | 1221989..1222381 (+) | 393 | WP_011038224.1 | H-NS family nucleoid-associated regulatory protein | - |
| ABQF06_RS05125 (ABQF06_005125) | glgX | 1222907..1225036 (-) | 2130 | WP_228442816.1 | glycogen debranching protein GlgX | - |
| ABQF06_RS05130 (ABQF06_005130) | rimK | 1225529..1226404 (+) | 876 | WP_116921527.1 | 30S ribosomal protein S6--L-glutamate ligase | - |
| ABQF06_RS05135 (ABQF06_005135) | - | 1227054..1227731 (+) | 678 | WP_003490678.1 | response regulator transcription factor | - |
| ABQF06_RS05140 (ABQF06_005140) | - | 1227724..1229058 (+) | 1335 | WP_012437598.1 | HAMP domain-containing sensor histidine kinase | - |
| ABQF06_RS05145 (ABQF06_005145) | - | 1229157..1229412 (-) | 256 | Protein_998 | SymE family type I addiction module toxin | - |
| ABQF06_RS05150 (ABQF06_005150) | coaE | 1229606..1230229 (-) | 624 | WP_225042504.1 | dephospho-CoA kinase | - |
| ABQF06_RS05155 (ABQF06_005155) | - | 1230243..1231106 (-) | 864 | WP_040940797.1 | A24 family peptidase | - |
| ABQF06_RS05160 (ABQF06_005160) | pilC | 1231113..1232375 (-) | 1263 | WP_228442817.1 | type II secretion system F family protein | Machinery gene |
| ABQF06_RS05165 (ABQF06_005165) | pilA/pilAI | 1232722..1233129 (+) | 408 | WP_349765624.1 | pilin | Machinery gene |
| ABQF06_RS05170 (ABQF06_005170) | - | 1233262..1233648 (+) | 387 | WP_373046337.1 | pilin | - |
| ABQF06_RS05175 (ABQF06_005175) | - | 1233707..1235527 (+) | 1821 | WP_323539564.1 | hypothetical protein | - |
| ABQF06_RS05180 (ABQF06_005180) | - | 1235636..1236394 (+) | 759 | WP_228442820.1 | class I SAM-dependent methyltransferase | - |
| ABQF06_RS05185 (ABQF06_005185) | - | 1236426..1237577 (+) | 1152 | WP_228442821.1 | glycosyltransferase family 9 protein | - |
| ABQF06_RS05190 (ABQF06_005190) | - | 1237580..1238422 (-) | 843 | WP_228442822.1 | glycosyltransferase | - |
| ABQF06_RS05195 (ABQF06_005195) | - | 1238416..1239588 (-) | 1173 | WP_228442823.1 | glycosyltransferase | - |
| ABQF06_RS05200 (ABQF06_005200) | - | 1239573..1240436 (-) | 864 | WP_228442824.1 | glycosyltransferase | - |
| ABQF06_RS05205 (ABQF06_005205) | - | 1240486..1241337 (-) | 852 | WP_108133901.1 | glycosyltransferase family 2 protein | - |
| ABQF06_RS05210 (ABQF06_005210) | pilB | 1241493..1243229 (+) | 1737 | WP_349765625.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ABQF06_RS05215 (ABQF06_005215) | pilR | 1244614..1246008 (-) | 1395 | WP_012437607.1 | sigma-54 dependent transcriptional regulator | Regulator |
| ABQF06_RS05220 (ABQF06_005220) | - | 1246217..1247827 (-) | 1611 | WP_228442825.1 | PAS domain-containing sensor histidine kinase | - |
| ABQF06_RS05225 (ABQF06_005225) | sucC | 1248061..1249230 (+) | 1170 | WP_011038209.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| ABQF06_RS05230 (ABQF06_005230) | sucD | 1249255..1250130 (+) | 876 | WP_011038208.1 | succinate--CoA ligase subunit alpha | - |
| ABQF06_RS05235 (ABQF06_005235) | - | 1250267..1250644 (+) | 378 | WP_019237352.1 | CopG family ribbon-helix-helix protein | - |
| ABQF06_RS05240 (ABQF06_005240) | - | 1250648..1250950 (+) | 303 | WP_011038207.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
Sequence
Protein
Download Length: 464 a.a. Molecular weight: 50253.62 Da Isoelectric Point: 6.3587
>NTDB_id=1042309 ABQF06_RS05215 WP_012437607.1 1244614..1246008(-) (pilR) [Xanthomonas campestris pv. campestris strain WHRI 8955]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME
Nucleotide
Download Length: 1395 bp
>NTDB_id=1042309 ABQF06_RS05215 WP_012437607.1 1244614..1246008(-) (pilR) [Xanthomonas campestris pv. campestris strain WHRI 8955]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAACTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTAGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCACTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACTATCCACGAGCAAGGCGC
ACGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAAAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCGGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
GTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAACTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCGCTGCTTACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCATCGCCTTGCCGCCAGCCCGGGCACCGCTGCG
GTTGAACCGCGCGAAGCGGTCGTCGACATCGACCCTGCCTCCTCCGCCCTGCCCTCGTACATCGAGCAACTCGAACGCGC
CGCGATCCAGAAGGCGCTAGAAGAAAACCGCTGGAACAAGACCAAGACTGCCGCGCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTCAAGAAGTTGGGGATGGAGTAG
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAACTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTAGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCACTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACTATCCACGAGCAAGGCGC
ACGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAAAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCGGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
GTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAACTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCGCTGCTTACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCATCGCCTTGCCGCCAGCCCGGGCACCGCTGCG
GTTGAACCGCGCGAAGCGGTCGTCGACATCGACCCTGCCTCCTCCGCCCTGCCCTCGTACATCGAGCAACTCGAACGCGC
CGCGATCCAGAAGGCGCTAGAAGAAAACCGCTGGAACAAGACCAAGACTGCCGCGCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTCAAGAAGTTGGGGATGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
63.067 |
99.784 |
0.629 |
| pilR | Acinetobacter baumannii strain A118 |
49.138 |
100 |
0.491 |