Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABQE72_RS05690 Genome accession   NZ_CP168116
Coordinates   1348587..1349981 (-) Length   464 a.a.
NCBI ID   WP_057671663.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain WHRI 8956     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1343587..1354981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQE72_RS05670 (ABQE72_005670) pilC 1344270..1345532 (-) 1263 WP_057671824.1 type II secretion system F family protein Machinery gene
  ABQE72_RS05675 (ABQE72_005675) pilA 1345874..1346302 (+) 429 WP_057671660.1 pilin Machinery gene
  ABQE72_RS05680 (ABQE72_005680) pilB 1346438..1348168 (+) 1731 WP_057671826.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABQE72_RS05690 (ABQE72_005690) pilR 1348587..1349981 (-) 1395 WP_057671663.1 sigma-54 dependent transcriptional regulator Regulator
  ABQE72_RS05695 (ABQE72_005695) - 1350190..1351800 (-) 1611 WP_057671664.1 PAS domain-containing sensor histidine kinase -
  ABQE72_RS05700 (ABQE72_005700) sucC 1352034..1353203 (+) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  ABQE72_RS05705 (ABQE72_005705) sucD 1353228..1354103 (+) 876 WP_057671668.1 succinate--CoA ligase subunit alpha -
  ABQE72_RS05710 (ABQE72_005710) - 1354207..1354617 (+) 411 WP_029217117.1 CopG family ribbon-helix-helix protein -
  ABQE72_RS05715 (ABQE72_005715) - 1354621..1354923 (+) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50279.66 Da        Isoelectric Point: 6.5131

>NTDB_id=1042292 ABQE72_RS05690 WP_057671663.1 1348587..1349981(-) (pilR) [Xanthomonas campestris pv. campestris strain WHRI 8956]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNQYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1042292 ABQE72_RS05690 WP_057671663.1 1348587..1349981(-) (pilR) [Xanthomonas campestris pv. campestris strain WHRI 8956]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAACTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCTC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCCGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
GTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAGCTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGCCTGGCCCGCAGCCATGGCCGCCCGATTCCCTTACTTACCCAGTCCGCGCTCGA
TGCCTTGAACCAATACGGCTTCCCGGGCAATGTGCGCGAGCTGGAAAACATCCTCGAGCGTGCGCTTGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCATCGCCTTGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCGGTCGTCGACATCGATCCGGCCTCCTCTGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAATTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.353

100

0.494

Multiple sequence alignment