Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QGS93_RS05635 Genome accession   NZ_OX460316
Coordinates   1169835..1170572 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain EC0026B isolate EC0026B_R4     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1164835..1175572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QGS93_RS05605 yfiL 1164994..1165359 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  QGS93_RS05610 aroF 1165569..1166639 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  QGS93_RS05615 tyrA 1166650..1167771 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  QGS93_RS05620 pheA 1167814..1168974 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  QGS93_RS05625 pheL 1169072..1169119 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  QGS93_RS05630 raiA 1169223..1169564 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QGS93_RS05635 comL 1169835..1170572 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QGS93_RS05640 rluD 1170707..1171687 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QGS93_RS05645 yfiH 1171684..1172415 (+) 732 WP_000040127.1 purine nucleoside phosphorylase YfiH -
  QGS93_RS05650 clpC 1172545..1175118 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=1042268 QGS93_RS05635 WP_000197686.1 1169835..1170572(-) (comL) [Escherichia coli strain EC0026B isolate EC0026B_R4]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=1042268 QGS93_RS05635 WP_000197686.1 1169835..1170572(-) (comL) [Escherichia coli strain EC0026B isolate EC0026B_R4]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376