Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ABWV92_RS03865 | Genome accession | NZ_AP028322 |
| Coordinates | 827321..827716 (+) | Length | 131 a.a. |
| NCBI ID | WP_002447777.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain KSE124-2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 822321..832716
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABWV92_RS03840 (KSE1242_07600) | - | 823740..824144 (+) | 405 | WP_002447782.1 | F0F1 ATP synthase subunit epsilon | - |
| ABWV92_RS03845 (KSE1242_07610) | - | 824293..824526 (+) | 234 | WP_002495678.1 | DUF1146 family protein | - |
| ABWV92_RS03850 (KSE1242_07620) | murA | 824636..825901 (+) | 1266 | WP_002490700.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| ABWV92_RS03855 (KSE1242_07630) | fabZ | 825935..826372 (+) | 438 | WP_002447779.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| ABWV92_RS03860 (KSE1242_07640) | - | 826690..827130 (-) | 441 | WP_002458706.1 | YwpF-like family protein | - |
| ABWV92_RS03865 (KSE1242_07650) | ssb | 827321..827716 (+) | 396 | WP_002447777.1 | single-stranded DNA-binding protein | Machinery gene |
| ABWV92_RS03870 (KSE1242_07660) | - | 828104..828763 (+) | 660 | WP_002447776.1 | transglycosylase family protein | - |
| ABWV92_RS03875 (KSE1242_07670) | tenA | 829047..829736 (+) | 690 | WP_002447775.1 | thiaminase II | - |
| ABWV92_RS03880 (KSE1242_07680) | thiD | 829729..830550 (+) | 822 | WP_002496982.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| ABWV92_RS03885 (KSE1242_07690) | thiM | 830543..831331 (+) | 789 | WP_002486939.1 | hydroxyethylthiazole kinase | - |
| ABWV92_RS03890 (KSE1242_07700) | thiE | 831337..831975 (+) | 639 | WP_002458704.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15144.99 Da Isoelectric Point: 5.2661
>NTDB_id=104217 ABWV92_RS03865 WP_002447777.1 827321..827716(+) (ssb) [Staphylococcus epidermidis strain KSE124-2]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
Nucleotide
Download Length: 396 bp
>NTDB_id=104217 ABWV92_RS03865 WP_002447777.1 827321..827716(+) (ssb) [Staphylococcus epidermidis strain KSE124-2]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
74.046 |
100 |
0.74 |
| ssb | Staphylococcus aureus MW2 |
73.282 |
100 |
0.733 |