Detailed information NTG1042166

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACDI51_RS09290
• Genome accession: NZ_CP168099
• Coordinates: 1904050..1904850 (-)
• Length: 266 a.a.
• NCBI ID: WP_004213441.1
• Uniprot ID: A0A9Q4U0T4
• Organism: Klebsiella pneumoniae strain LA19
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1899050..1909850

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACDI51_RS09270 (ACDI51_09275)	dksA	1899630..1900085 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ACDI51_RS09275 (ACDI51_09280)	sfsA	1900248..1900964 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ACDI51_RS09280 (ACDI51_09285)	thpR	1900964..1901500 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ACDI51_RS09285 (ACDI51_09290)	hrpB	1901573..1904002 (+)	2430	WP_020804570.1	ATP-dependent helicase HrpB	-
ACDI51_RS09290 (ACDI51_09295)	pilD	1904050..1904850 (-)	801	WP_004213441.1	prepilin peptidase	Machinery gene
ACDI51_RS09295 (ACDI51_09300)	-	1904847..1905593 (-)	747	WP_004145897.1	type II secretion system protein N	-
ACDI51_RS09300 (ACDI51_09305)	-	1905583..1906068 (-)	486	WP_004145896.1	type II secretion system protein M	-
ACDI51_RS09305 (ACDI51_09310)	gspL	1906061..1907254 (-)	1194	WP_020804558.1	type II secretion system protein GspL	-
ACDI51_RS09310 (ACDI51_09315)	gspK	1907241..1908227 (-)	987	WP_004183041.1	type II secretion system minor pseudopilin GspK	-
ACDI51_RS09315 (ACDI51_09320)	gspJ	1908224..1908820 (-)	597	WP_032411156.1	type II secretion system minor pseudopilin GspJ	-
ACDI51_RS09320 (ACDI51_09325)	gspI	1908817..1909182 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACDI51_RS09325 (ACDI51_09330)	gspH	1909179..1909694 (-)	516	WP_020804560.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29405.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1042166 ACDI51_RS09290 WP_004213441.1 1904050..1904850(-) (pilD) [Klebsiella pneumoniae strain LA19]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1042166 ACDI51_RS09290 WP_004213441.1 1904050..1904850(-) (pilD) [Klebsiella pneumoniae strain LA19]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425