Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ACCK16_RS07520 Genome accession   NZ_CP168089
Coordinates   1573469..1573915 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CUBIST-23     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1568469..1578915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCK16_RS07490 (ACCK16_07490) gcvPA 1569395..1570741 (-) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  ACCK16_RS07495 (ACCK16_07495) gcvT 1570761..1571852 (-) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  ACCK16_RS07500 (ACCK16_07500) - 1572011..1572535 (-) 525 WP_001015120.1 shikimate kinase -
  ACCK16_RS07505 (ACCK16_07505) - 1572525..1572671 (-) 147 WP_001789879.1 hypothetical protein -
  ACCK16_RS07510 (ACCK16_07510) comGF 1572768..1573265 (-) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACCK16_RS07515 (ACCK16_07515) comGE 1573183..1573482 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  ACCK16_RS07520 (ACCK16_07520) comGD 1573469..1573915 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACCK16_RS07525 (ACCK16_07525) comGC 1573893..1574204 (-) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  ACCK16_RS07530 (ACCK16_07530) comGB 1574218..1575289 (-) 1072 Protein_1477 competence type IV pilus assembly protein ComGB -
  ACCK16_RS07535 (ACCK16_07535) comGA 1575261..1576235 (-) 975 WP_302287794.1 competence type IV pilus ATPase ComGA Machinery gene
  ACCK16_RS07540 (ACCK16_07540) - 1576287..1576910 (-) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  ACCK16_RS07545 (ACCK16_07545) - 1576907..1577236 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  ACCK16_RS07550 (ACCK16_07550) - 1577236..1578222 (-) 987 WP_000161307.1 ROK family glucokinase -
  ACCK16_RS07555 (ACCK16_07555) - 1578219..1578422 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=1042050 ACCK16_RS07520 WP_001796473.1 1573469..1573915(-) (comGD) [Staphylococcus aureus strain CUBIST-23]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1042050 ACCK16_RS07520 WP_001796473.1 1573469..1573915(-) (comGD) [Staphylococcus aureus strain CUBIST-23]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
CATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment