Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACCK16_RS02675 Genome accession   NZ_CP168089
Coordinates   560994..561563 (+) Length   189 a.a.
NCBI ID   WP_000872878.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CUBIST-23     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 555994..566563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCK16_RS02650 (ACCK16_02650) cysE 557207..557854 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  ACCK16_RS02655 (ACCK16_02655) cysS 557838..559238 (+) 1401 WP_000631980.1 cysteine--tRNA ligase -
  ACCK16_RS02660 (ACCK16_02660) - 559231..559635 (+) 405 WP_078252994.1 Mini-ribonuclease 3 -
  ACCK16_RS02665 (ACCK16_02665) rlmB 559643..560389 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACCK16_RS02670 (ACCK16_02670) - 560389..560913 (+) 525 WP_000664731.1 NYN domain-containing protein -
  ACCK16_RS02675 (ACCK16_02675) sigH 560994..561563 (+) 570 WP_000872878.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACCK16_RS02680 (ACCK16_02680) rpmG 561678..561821 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACCK16_RS02685 (ACCK16_02685) secE 561877..562059 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACCK16_RS02690 (ACCK16_02690) nusG 562072..562620 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACCK16_RS02695 (ACCK16_02695) rplK 562801..563223 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACCK16_RS02700 (ACCK16_02700) rplA 563431..564123 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACCK16_RS02705 (ACCK16_02705) rplJ 564395..564895 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACCK16_RS02710 (ACCK16_02710) rplL 564938..565306 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACCK16_RS02715 (ACCK16_02715) - 565481..566089 (+) 609 WP_000020295.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23126.01 Da        Isoelectric Point: 9.6015

>NTDB_id=1042036 ACCK16_RS02675 WP_000872878.1 560994..561563(+) (sigH) [Staphylococcus aureus strain CUBIST-23]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCVIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1042036 ACCK16_RS02675 WP_000872878.1 560994..561563(+) (sigH) [Staphylococcus aureus strain CUBIST-23]
TTGAAATATGATTTGACAACTCAAGATAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGTAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment