Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QOR53_RS05525 Genome accession   NZ_OX437061
Coordinates   1043856..1044404 (+) Length   182 a.a.
NCBI ID   WP_002890071.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1038856..1049404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR53_RS05490 - 1039046..1039471 (+) 426 WP_002890069.1 GNAT family N-acetyltransferase -
  QOR53_RS05495 - 1039535..1040155 (+) 621 WP_002856358.1 NAD(P)H-dependent oxidoreductase -
  QOR53_RS05500 - 1040155..1040760 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  QOR53_RS05505 pgsA 1040885..1041421 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QOR53_RS05510 rseP 1041418..1042524 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  QOR53_RS05515 - 1042517..1043383 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  QOR53_RS05520 rpsF 1043470..1043844 (+) 375 WP_002890070.1 30S ribosomal protein S6 -
  QOR53_RS05525 ssb 1043856..1044404 (+) 549 WP_002890071.1 single-stranded DNA-binding protein Machinery gene
  QOR53_RS05530 rpsR 1044415..1044675 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  QOR53_RS05535 lon 1044735..1047110 (-) 2376 WP_002853487.1 endopeptidase La -
  QOR53_RS05540 - 1047127..1047774 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  QOR53_RS05545 fliW 1047935..1048324 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  QOR53_RS05550 proC 1048324..1049055 (+) 732 WP_002864259.1 pyrroline-5-carboxylate reductase Machinery gene
  QOR53_RS05555 ctsT 1049052..1049354 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20594.53 Da        Isoelectric Point: 5.0431

>NTDB_id=1042006 QOR53_RS05525 WP_002890071.1 1043856..1044404(+) (ssb) [Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLAKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNVPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=1042006 QOR53_RS05525 WP_002890071.1 1043856..1044404(+) (ssb) [Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTGCAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGTTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363

Multiple sequence alignment