Detailed information NTG1041798

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACDJ39_RS11010
• Genome accession: NZ_CP168053
• Coordinates: 2257856..2258656 (-)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain LA96
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2252856..2263656

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACDJ39_RS10990 (ACDJ39_10990)	dksA	2253436..2253891 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ACDJ39_RS10995 (ACDJ39_10995)	sfsA	2254054..2254770 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ACDJ39_RS11000 (ACDJ39_11000)	thpR	2254770..2255306 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ACDJ39_RS11005 (ACDJ39_11005)	hrpB	2255379..2257808 (+)	2430	WP_004222692.1	ATP-dependent helicase HrpB	-
ACDJ39_RS11010 (ACDJ39_11010)	pilD	2257856..2258656 (-)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ACDJ39_RS11015 (ACDJ39_11015)	-	2258653..2259399 (-)	747	WP_004145897.1	type II secretion system protein N	-
ACDJ39_RS11020 (ACDJ39_11020)	-	2259389..2259874 (-)	486	WP_004151943.1	type II secretion system protein M	-
ACDJ39_RS11025 (ACDJ39_11025)	gspL	2259867..2261060 (-)	1194	WP_004191957.1	type II secretion system protein GspL	-
ACDJ39_RS11030 (ACDJ39_11030)	gspK	2261047..2262033 (-)	987	WP_004222697.1	type II secretion system minor pseudopilin GspK	-
ACDJ39_RS11035 (ACDJ39_11035)	gspJ	2262030..2262626 (-)	597	WP_004222700.1	type II secretion system minor pseudopilin GspJ	-
ACDJ39_RS11040 (ACDJ39_11040)	gspI	2262623..2262988 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACDJ39_RS11045 (ACDJ39_11045)	gspH	2262985..2263500 (-)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1041798 ACDJ39_RS11010 WP_004145898.1 2257856..2258656(-) (pilD) [Klebsiella pneumoniae strain LA96]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1041798 ACDJ39_RS11010 WP_004145898.1 2257856..2258656(-) (pilD) [Klebsiella pneumoniae strain LA96]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGTCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425