Detailed information NTG1041728

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACDJ05_RS10830
• Genome accession: NZ_CP168046
• Coordinates: 2201650..2202450 (-)
• Length: 266 a.a.
• NCBI ID: WP_004213441.1
• Uniprot ID: A0A9Q4U0T4
• Organism: Klebsiella pneumoniae strain LA68
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2196650..2207450

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACDJ05_RS10810 (ACDJ05_10810)	dksA	2197230..2197685 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ACDJ05_RS10815 (ACDJ05_10815)	sfsA	2197848..2198564 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ACDJ05_RS10820 (ACDJ05_10820)	thpR	2198564..2199100 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ACDJ05_RS10825 (ACDJ05_10825)	hrpB	2199173..2201602 (+)	2430	WP_020804570.1	ATP-dependent helicase HrpB	-
ACDJ05_RS10830 (ACDJ05_10830)	pilD	2201650..2202450 (-)	801	WP_004213441.1	A24 family peptidase	Machinery gene
ACDJ05_RS10835 (ACDJ05_10835)	-	2202447..2203193 (-)	747	WP_004145897.1	type II secretion system protein N	-
ACDJ05_RS10840 (ACDJ05_10840)	-	2203183..2203668 (-)	486	WP_004145896.1	type II secretion system protein M	-
ACDJ05_RS10845 (ACDJ05_10845)	gspL	2203661..2204854 (-)	1194	WP_020804558.1	type II secretion system protein GspL	-
ACDJ05_RS10850 (ACDJ05_10850)	gspK	2204841..2205827 (-)	987	WP_004183041.1	type II secretion system minor pseudopilin GspK	-
ACDJ05_RS10855 (ACDJ05_10855)	gspJ	2205824..2206420 (-)	597	WP_032411156.1	type II secretion system minor pseudopilin GspJ	-
ACDJ05_RS10860 (ACDJ05_10860)	gspI	2206417..2206782 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACDJ05_RS10865 (ACDJ05_10865)	gspH	2206779..2207294 (-)	516	WP_020804560.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29405.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1041728 ACDJ05_RS10830 WP_004213441.1 2201650..2202450(-) (pilD) [Klebsiella pneumoniae strain LA68]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1041728 ACDJ05_RS10830 WP_004213441.1 2201650..2202450(-) (pilD) [Klebsiella pneumoniae strain LA68]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425