Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB9M03_RS00455 Genome accession   NZ_CP168035
Coordinates   97192..97821 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC23HZZ201     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 92192..102821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9M03_RS00435 (AB9M03_00435) ycbZ 92593..94353 (-) 1761 WP_188003403.1 Lon protease family protein -
  AB9M03_RS00440 (AB9M03_00440) matP 94539..94991 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AB9M03_RS00445 (AB9M03_00445) ompA 95067..96107 (-) 1041 WP_000750416.1 porin OmpA -
  AB9M03_RS00450 (AB9M03_00450) sulA 96464..96973 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AB9M03_RS00455 (AB9M03_00455) sxy/tfoX 97192..97821 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AB9M03_RS00460 (AB9M03_00460) yccS 97784..99946 (-) 2163 WP_000875061.1 YccS family putative transporter -
  AB9M03_RS00465 (AB9M03_00465) yccF 99956..100402 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AB9M03_RS00470 (AB9M03_00470) helD 100525..102579 (+) 2055 WP_188003406.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1041689 AB9M03_RS00455 WP_000839153.1 97192..97821(+) (sxy/tfoX) [Escherichia coli strain EC23HZZ201]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1041689 AB9M03_RS00455 WP_000839153.1 97192..97821(+) (sxy/tfoX) [Escherichia coli strain EC23HZZ201]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment