Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACDZ08_RS07600 Genome accession   NZ_CP168014
Coordinates   1580774..1581460 (-) Length   228 a.a.
NCBI ID   WP_072353822.1    Uniprot ID   -
Organism   Staphylococcus aureus strain sa230627_barcode16     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1575774..1586460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDZ08_RS07580 (ACDZ08_07580) rpsT 1576688..1576939 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  ACDZ08_RS07585 (ACDZ08_07585) holA 1576984..1577958 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  ACDZ08_RS07590 (ACDZ08_07590) comEC 1578015..1580216 (-) 2202 WP_001815444.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACDZ08_RS07595 (ACDZ08_07595) - 1580221..1580682 (-) 462 WP_000439693.1 ComE operon protein 2 -
  ACDZ08_RS07600 (ACDZ08_07600) comEA 1580774..1581460 (-) 687 WP_072353822.1 ComEA family DNA-binding protein Machinery gene
  ACDZ08_RS07605 (ACDZ08_07605) - 1581500..1582216 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  ACDZ08_RS07610 (ACDZ08_07610) rsfS 1582219..1582572 (-) 354 WP_001088020.1 ribosome silencing factor -
  ACDZ08_RS07615 (ACDZ08_07615) yqeK 1582573..1583157 (-) 585 WP_001019320.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACDZ08_RS07620 (ACDZ08_07620) nadD 1583147..1583716 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACDZ08_RS07625 (ACDZ08_07625) yhbY 1583719..1584009 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  ACDZ08_RS07630 (ACDZ08_07630) aroE 1584013..1584819 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  ACDZ08_RS07635 (ACDZ08_07635) yqeH 1584833..1585933 (-) 1101 WP_001280136.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25773.50 Da        Isoelectric Point: 9.6753

>NTDB_id=1041248 ACDZ08_RS07600 WP_072353822.1 1580774..1581460(-) (comEA) [Staphylococcus aureus strain sa230627_barcode16]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1041248 ACDZ08_RS07600 WP_072353822.1 1580774..1581460(-) (comEA) [Staphylococcus aureus strain sa230627_barcode16]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

99.561

100

0.996
  comEA Staphylococcus aureus N315

97.807

100

0.978

Multiple sequence alignment