Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACDZ05_RS10150 Genome accession   NZ_CP168013
Coordinates   2072110..2072505 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain sa230711_barcode73     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2067110..2077505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDZ05_RS10125 (ACDZ05_10130) thiE 2067709..2068350 (-) 642 WP_000483161.1 thiamine phosphate synthase -
  ACDZ05_RS10130 (ACDZ05_10135) thiM 2068352..2069143 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  ACDZ05_RS10135 (ACDZ05_10140) thiD 2069127..2069957 (-) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACDZ05_RS10140 (ACDZ05_10145) tenA 2069950..2070639 (-) 690 WP_000396068.1 thiaminase II -
  ACDZ05_RS10145 (ACDZ05_10150) sceD 2071026..2071721 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  ACDZ05_RS10150 (ACDZ05_10155) ssb 2072110..2072505 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACDZ05_RS10155 (ACDZ05_10160) - 2072699..2073139 (+) 441 WP_000846746.1 YwpF-like family protein -
  ACDZ05_RS10160 (ACDZ05_10165) fabZ 2073196..2073636 (-) 441 WP_241366889.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACDZ05_RS10165 (ACDZ05_10170) murA 2073670..2074935 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACDZ05_RS10170 (ACDZ05_10175) - 2075046..2075279 (-) 234 WP_000384523.1 DUF1146 family protein -
  ACDZ05_RS10175 (ACDZ05_10180) - 2075932..2076336 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1041219 ACDZ05_RS10150 WP_000932694.1 2072110..2072505(-) (ssb) [Staphylococcus aureus strain sa230711_barcode73]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1041219 ACDZ05_RS10150 WP_000932694.1 2072110..2072505(-) (ssb) [Staphylococcus aureus strain sa230711_barcode73]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment