Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABQX27_RS17220 Genome accession   NZ_CP167997
Coordinates   3734286..3735677 (+) Length   463 a.a.
NCBI ID   WP_033013168.1    Uniprot ID   A0A854DU87
Organism   Xanthomonas oryzae pv. oryzae strain WHRI 5233     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3729286..3740677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQX27_RS17200 (ABQX27_017200) - 3729375..3729866 (-) 492 WP_027703282.1 hypothetical protein -
  ABQX27_RS17205 (ABQX27_017205) sucD 3730039..3730914 (-) 876 WP_012444445.1 succinate--CoA ligase subunit alpha -
  ABQX27_RS17210 (ABQX27_017210) sucC 3730939..3732108 (-) 1170 WP_011258367.1 ADP-forming succinate--CoA ligase subunit beta -
  ABQX27_RS17215 (ABQX27_017215) - 3732342..3733955 (+) 1614 WP_012444444.1 PAS domain-containing sensor histidine kinase -
  ABQX27_RS17220 (ABQX27_017220) pilR 3734286..3735677 (+) 1392 WP_033013168.1 sigma-54 dependent transcriptional regulator Regulator
  ABQX27_RS17225 (ABQX27_017225) - 3735750..3735956 (+) 207 WP_027703281.1 YhfG family protein -
  ABQX27_RS17230 (ABQX27_017230) - 3736018..3736179 (+) 162 WP_153296778.1 hypothetical protein -
  ABQX27_RS17235 (ABQX27_017235) - 3736267..3736527 (+) 261 WP_027703280.1 cell filamentation protein Fic -
  ABQX27_RS17240 (ABQX27_017240) pilB 3736536..3738269 (-) 1734 WP_011408072.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABQX27_RS17245 (ABQX27_017245) - 3738304..3739830 (-) 1527 WP_027703279.1 membrane protein -
  ABQX27_RS17250 (ABQX27_017250) - 3739800..3740429 (-) 630 WP_011408070.1 hypothetical protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 50092.42 Da        Isoelectric Point: 6.3268

>NTDB_id=1041040 ABQX27_RS17220 WP_033013168.1 3734286..3735677(+) (pilR) [Xanthomonas oryzae pv. oryzae strain WHRI 5233]
MSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRLLGDSSAMESLRATIGKVARS
QAPIYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLPQ
LAAAIIARLAHSHGRTIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAAV
EPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=1041040 ABQX27_RS17220 WP_033013168.1 3734286..3735677(+) (pilR) [Xanthomonas oryzae pv. oryzae strain WHRI 5233]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTAT
GGGGCTGCGCATCAGCACCGCTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGT
GGACATCGGCGTGCTGCGCGGCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCAC
CTGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGT
CAGGCGCCGATCTACATCGTCGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACG
CGCCGCCGGCCCGTTCGTCCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGA
AAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTATTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAA
GTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTC
CGGCGAAACCCTGGTGGACGTACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTTTTC
GACACGATCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAG
CTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCACCATTCCACTGCTGACCCAATCCGCGCTCGACGC
ACTGGATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTTGCCCTGGCCGAAGACG
ACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTG
GAACCACGCGAAGCCGTCGTCGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGC
GATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGGGCGCTGC
GTTACAAGCTCAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Sigma-54 interaction domain (Sigma54_activat)

(141-306)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A854DU87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.987

99.784

0.629
  pilR Acinetobacter baumannii strain A118

48.268

99.784

0.482

Multiple sequence alignment