Detailed information NTG1041019

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABRP30_RS24375
• Genome accession: NZ_CP167996
• Coordinates: 5330808..5331674 (+)
• Length: 288 a.a.
• NCBI ID: WP_349976615.1
• Uniprot ID: -
• Organism: Pseudomonas sp. WHRI 8519
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5325808..5336674

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABRP30_RS24355 (ABRP30_024355)	-	5327333..5328661 (-)	1329	WP_267818882.1	integrase arm-type DNA-binding domain-containing protein	-
ABRP30_RS24365 (ABRP30_024365)	-	5328972..5329382 (-)	411	WP_349976613.1	pilin	-
ABRP30_RS24370 (ABRP30_024370)	-	5329597..5330805 (+)	1209	WP_349976614.1	type II secretion system F family protein	-
ABRP30_RS24375 (ABRP30_024375)	pilD	5330808..5331674 (+)	867	WP_349976615.1	A24 family peptidase	Machinery gene
ABRP30_RS24380 (ABRP30_024380)	coaE	5331674..5332297 (+)	624	WP_349976616.1	dephospho-CoA kinase	-
ABRP30_RS24385 (ABRP30_024385)	yacG	5332294..5332494 (+)	201	WP_241807175.1	DNA gyrase inhibitor YacG	-
ABRP30_RS24390 (ABRP30_024390)	-	5332531..5333277 (-)	747	WP_349976617.1	energy-coupling factor ABC transporter permease	-
ABRP30_RS24395 (ABRP30_024395)	-	5333312..5333941 (+)	630	WP_012316343.1	DUF1780 domain-containing protein	-
ABRP30_RS24400 (ABRP30_024400)	-	5334074..5334247 (+)	174	WP_267818895.1	DUF3094 family protein	-
ABRP30_RS24405 (ABRP30_024405)	-	5334332..5335627 (+)	1296	WP_267818897.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31497.41 Da
• Isoelectric Point: 7.0612

>NTDB_id=1041019 ABRP30_RS24375 WP_349976615.1 5330808..5331674(+) (pilD) [Pseudomonas sp. WHRI 8519]
MTLWTLLAEHPAYFYTVAAVLGLLVGSFINVVAYRLPIMLERQWQREAQEALGLPSDAHERFDLCLPASRCPHCGHAIRA
WENIPVLSYLALRGRCSACKQPIGLRYPLVELACALLSLAVAWHSGAGLQALALLAFTWSLLALSLIDHDKQILPDVVVL
PTLWLGLIVNVFATVVPLPDAIWGAVAGYLSLWLVYWLFKLVTGKEGMGYGDFKLLALIGAWGGWQAVPLTLMLSSLVGA
VVGVCMLRLRSHSMGTAIPFGPYLAIAGWIAVLWGDEIYASYLQLLGF

Nucleotide

• Length: 867 bp

>NTDB_id=1041019 ABRP30_RS24375 WP_349976615.1 5330808..5331674(+) (pilD) [Pseudomonas sp. WHRI 8519]
ATGACTTTATGGACGTTACTGGCCGAACATCCGGCGTATTTCTACACCGTGGCGGCTGTGCTTGGCCTGTTGGTTGGCAG
CTTCATCAATGTGGTGGCGTACAGGCTGCCGATCATGCTGGAGCGCCAATGGCAGCGTGAAGCGCAGGAGGCGCTGGGGC
TGCCGAGCGATGCGCACGAGCGCTTCGACCTGTGCCTGCCCGCCTCACGTTGCCCGCACTGTGGGCACGCGATTCGTGCC
TGGGAAAATATTCCGGTGCTCAGTTACCTGGCCTTGCGCGGGCGCTGTTCTGCGTGCAAACAGCCTATCGGCTTACGGTA
CCCGCTGGTGGAGCTGGCCTGCGCCTTGCTGTCGCTGGCGGTGGCCTGGCATTCCGGTGCCGGGCTGCAAGCACTGGCCT
TGCTGGCCTTTACCTGGAGCCTGCTGGCGCTGAGCCTTATCGACCACGACAAGCAGATCCTGCCGGATGTGGTGGTGCTG
CCAACGCTGTGGCTGGGGCTGATCGTCAACGTTTTCGCTACCGTGGTGCCATTGCCTGACGCCATCTGGGGCGCGGTGGC
CGGTTATCTCAGCCTGTGGCTGGTGTATTGGCTGTTCAAGCTAGTCACCGGCAAGGAAGGCATGGGTTACGGCGATTTCA
AGCTGCTGGCGCTGATCGGAGCCTGGGGCGGCTGGCAGGCAGTGCCGCTGACCTTGATGTTGTCGTCGCTGGTCGGGGCG
GTGGTGGGGGTGTGCATGCTGCGCCTGCGTAGCCATTCGATGGGCACGGCGATACCTTTTGGTCCTTATCTGGCCATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACCTGCAACTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.158	96.528	0.503
pilD	Acinetobacter baumannii D1279779	51.292	94.097	0.483
pilD	Acinetobacter nosocomialis M2	50.554	94.097	0.476
pilD	Vibrio campbellii strain DS40M4	49.097	96.181	0.472
pilD	Neisseria gonorrhoeae MS11	49.057	92.014	0.451