Detailed information NTG1040992

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABRP31_RS23310
• Genome accession: NZ_CP167995
• Coordinates: 5131290..5132630 (+)
• Length: 446 a.a.
• NCBI ID: WP_349972588.1
• Uniprot ID: -
• Organism: Pseudomonas caspiana strain WHRI 7043
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5126290..5137630

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABRP31_RS23290 (ABRP31_023290)	rluD	5126971..5127933 (-)	963	WP_087272735.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
ABRP31_RS23295 (ABRP31_023295)	-	5128082..5129095 (+)	1014	WP_349972591.1	outer membrane protein assembly factor BamD	-
ABRP31_RS23300 (ABRP31_023300)	-	5129466..5129705 (+)	240	WP_087272729.1	PP0621 family protein	-
ABRP31_RS23305 (ABRP31_023305)	pilS	5129695..5131287 (+)	1593	WP_349972589.1	ATP-binding protein	Regulator
ABRP31_RS23310 (ABRP31_023310)	pilR	5131290..5132630 (+)	1341	WP_349972588.1	sigma-54 dependent transcriptional regulator	Regulator
ABRP31_RS23315 (ABRP31_023315)	thiO	5132789..5133892 (-)	1104	WP_349972587.1	glycine oxidase ThiO	-
ABRP31_RS23320 (ABRP31_023320)	-	5133916..5134338 (-)	423	WP_349972586.1	type IV pilin protein	-
ABRP31_RS23325 (ABRP31_023325)	-	5134350..5137565 (-)	3216	WP_349972585.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 50079.34 Da
• Isoelectric Point: 6.5949

>NTDB_id=1040992 ABRP31_RS23310 WP_349972588.1 5131290..5132630(+) (pilR) [Pseudomonas caspiana strain WHRI 7043]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSACNVKEAMDWLAREPFDLCLTDMRLPDGTGLELVQHIQQRHPLTPVA
MITAHGSLDTAIHALKAGAFDFLTKPVDLNRLRELVSSALRLNPPSQPAPGIARRLLGDSPPIQALRQQIDKLARSQAPV
YISGESGSGKERVARLIHEQGPRAERPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAANGGTLFLDEVADL
PLTMQVKLLRAIQEKSVRSVGAQQELVVDVRVLCATHKDLQVEVSAQRFRQDLYYRLNVIELQVPPLRERRQDIEQLAAH
VLKRLADESSQPVAQLAPQALEALKSYRFPGNVRELENILERAYTLCENNQINVADLRLAQPSASAEQDGANLADIDNLE
DYLESIERKLILQALEETRWNRTAAAQRLNLTFRSMRYRLKKLGLE

Nucleotide

• Length: 1341 bp

>NTDB_id=1040992 ABRP31_RS23310 WP_349972588.1 5131290..5132630(+) (pilR) [Pseudomonas caspiana strain WHRI 7043]
ATGAGCCAGCGGCAAAAAATCCTGATAGTCGACGACGAGCCGGACATCCGCGAACTGCTGGAGATCACTCTAGGCCGGAT
GAAACTCGATACCCGTAGTGCGTGCAACGTCAAGGAAGCCATGGATTGGCTGGCCCGTGAGCCCTTCGATCTGTGTCTGA
CCGACATGCGCCTGCCCGACGGCACTGGCCTTGAACTGGTGCAGCACATCCAGCAGCGCCATCCCCTCACACCCGTCGCG
ATGATTACTGCACATGGCAGCCTGGACACTGCGATTCATGCCTTGAAGGCTGGGGCTTTTGATTTTCTCACCAAACCCGT
GGACCTGAACCGACTGCGGGAATTGGTTAGCAGCGCGCTGCGACTCAACCCGCCAAGTCAGCCTGCGCCGGGCATTGCTC
GTCGCCTGCTTGGCGACTCGCCGCCCATCCAGGCTCTGCGCCAGCAAATCGACAAGCTGGCGCGCAGCCAGGCTCCGGTC
TATATCAGCGGCGAATCGGGCAGTGGCAAGGAGCGCGTAGCCCGGCTGATTCATGAGCAAGGACCCCGCGCCGAACGGCC
GTTTATCCCGGTCAACTGCGGCGCTATTCCTTCCGAGTTGATGGAGAGCGAATTCTTCGGCCATCGCAAGGGCAGCTTCA
GCGGGGCACATGAGGATAAACCGGGGCTGTTTCAGGCGGCCAACGGTGGGACGCTGTTTCTTGATGAAGTTGCCGACCTG
CCGCTGACCATGCAGGTAAAACTGCTGCGGGCGATACAGGAGAAATCGGTACGCAGCGTGGGTGCTCAGCAGGAATTGGT
AGTGGACGTACGCGTGCTGTGCGCCACGCACAAAGACCTGCAGGTCGAAGTCAGCGCTCAGCGCTTTCGTCAGGACTTGT
ATTACCGGCTGAACGTCATCGAGCTGCAGGTGCCCCCGTTGCGGGAACGTCGGCAAGACATCGAACAACTGGCCGCCCAC
GTACTCAAGCGCCTGGCAGATGAATCATCACAGCCCGTTGCGCAGCTCGCCCCGCAAGCGCTTGAGGCACTCAAGAGTTA
CCGTTTTCCGGGGAACGTGCGTGAGCTGGAAAATATTCTCGAGCGCGCCTATACCTTGTGCGAAAACAACCAGATCAATG
TAGCCGACCTGCGTCTGGCGCAGCCGTCAGCATCCGCCGAGCAAGACGGCGCCAACCTCGCGGACATCGACAACCTTGAA
GATTATCTGGAAAGCATCGAGCGCAAACTGATTCTGCAAGCCCTCGAAGAAACCCGCTGGAACCGCACCGCAGCGGCACA
GCGCCTGAACCTGACGTTTCGCTCGATGCGTTATCGGTTGAAAAAGTTGGGCTTGGAGTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Sigma-54 interaction domain (Sigma54_activat) (137-303)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.279	99.552	0.789
pilR	Acinetobacter baumannii strain A118	49.46	100	0.513