Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ABRP31_RS23305 Genome accession   NZ_CP167995
Coordinates   5129695..5131287 (+) Length   530 a.a.
NCBI ID   WP_349972589.1    Uniprot ID   -
Organism   Pseudomonas caspiana strain WHRI 7043     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5124695..5136287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRP31_RS23285 (ABRP31_023285) pgeF 5126246..5126974 (-) 729 WP_349972592.1 peptidoglycan editing factor PgeF -
  ABRP31_RS23290 (ABRP31_023290) rluD 5126971..5127933 (-) 963 WP_087272735.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABRP31_RS23295 (ABRP31_023295) - 5128082..5129095 (+) 1014 WP_349972591.1 outer membrane protein assembly factor BamD -
  ABRP31_RS23300 (ABRP31_023300) - 5129466..5129705 (+) 240 WP_087272729.1 PP0621 family protein -
  ABRP31_RS23305 (ABRP31_023305) pilS 5129695..5131287 (+) 1593 WP_349972589.1 ATP-binding protein Regulator
  ABRP31_RS23310 (ABRP31_023310) pilR 5131290..5132630 (+) 1341 WP_349972588.1 sigma-54 dependent transcriptional regulator Regulator
  ABRP31_RS23315 (ABRP31_023315) thiO 5132789..5133892 (-) 1104 WP_349972587.1 glycine oxidase ThiO -
  ABRP31_RS23320 (ABRP31_023320) - 5133916..5134338 (-) 423 WP_349972586.1 type IV pilin protein -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58629.82 Da        Isoelectric Point: 7.0712

>NTDB_id=1040991 ABRP31_RS23305 WP_349972589.1 5129695..5131287(+) (pilS) [Pseudomonas caspiana strain WHRI 7043]
MIAETLSLGSLQAQRILRLYNLYRLTIGIMLVLLISSSLDTELLEMANPNLFRAGCWLYLVFNILIVVLLERPNRQAQLF
VLAMADALLLSALFYAGGGPPSGIGNVLIASVAISNVLLRGRIGLLIAAVAAIGIIYLTFYISFSNPTVASHYLQAGSLG
ALCFAAALLVQALTRRLHISETLAEQRAADVDNLEELNALILQRMRTGIVVLNARRRVLLANQSALNLLGHEQLTGSIID
TYSPQLVTGLRQWLINPALVPQSISVSPNGPVLQPGFAALNRGDQRQTLIFLEDLSQISQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLNESEELTSADHRLGQIIHEQSQRMNRVIENVLQLSRQRHAEPQLLDLKIWLEQFVEETRSRLPAH
QSIHLQITPAPLTTRMDAEQLNQVLNNLVQNAMRYSGKSHEHAQVWIRLFQEPRSDQAILEVLDDGPGVPHEHMTKMFEP
FFTTESKGTGLGLYLSRELCESNQAHLDYTFREGGGSCLRITFAHPLKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=1040991 ABRP31_RS23305 WP_349972589.1 5129695..5131287(+) (pilS) [Pseudomonas caspiana strain WHRI 7043]
GTGATCGCTGAAACACTTTCGCTGGGCAGCCTTCAGGCCCAGCGCATTCTGCGTCTGTATAACCTCTATCGATTAACCAT
CGGCATCATGTTGGTGCTGTTGATTTCCAGCAGTCTGGACACCGAACTGCTGGAAATGGCCAACCCCAACCTGTTTCGCG
CCGGTTGCTGGCTGTATCTGGTCTTCAACATCCTGATCGTTGTATTGCTGGAGCGCCCCAATCGTCAGGCACAACTGTTC
GTCCTGGCAATGGCCGACGCGCTGCTGCTATCGGCGCTTTTCTATGCCGGAGGTGGACCGCCCAGCGGTATCGGCAACGT
CCTGATCGCTTCAGTCGCCATCAGCAACGTATTGCTTCGCGGCCGCATCGGCTTGCTGATTGCTGCCGTTGCAGCCATTG
GCATCATCTATCTGACGTTCTACATCAGTTTCAGCAACCCCACGGTGGCAAGTCACTACTTACAGGCCGGCTCATTGGGC
GCGCTGTGCTTTGCGGCAGCCCTGCTGGTTCAGGCCCTGACCCGACGTTTGCACATCAGCGAGACACTGGCCGAACAACG
CGCTGCCGATGTGGACAATCTCGAAGAACTCAACGCCCTGATTCTGCAACGCATGCGCACCGGCATCGTGGTACTGAACG
CACGTCGCCGTGTGTTACTGGCCAATCAGAGCGCGCTGAATCTGCTCGGCCACGAACAACTGACCGGCTCGATTATCGAC
ACTTATTCGCCGCAGTTGGTAACAGGGCTACGGCAGTGGCTGATCAATCCCGCACTGGTTCCACAAAGTATTTCAGTGTC
ACCCAACGGGCCGGTCCTGCAACCGGGCTTCGCTGCGCTTAACCGCGGCGATCAGCGCCAGACCCTGATCTTTCTTGAAG
ATCTGTCGCAGATATCGCAACAGGCTCAGCAACTGAAACTCGCCGCGCTAGGCCGTCTGACGGCAGGTATTGCCCACGAA
ATCCGTAACCCGCTGGGCGCCATCAGTCATGCCGCGCAATTGCTCAATGAGTCGGAAGAACTGACCAGCGCCGATCATCG
CCTGGGGCAGATCATTCATGAGCAATCACAGCGCATGAATCGCGTCATCGAAAACGTTTTGCAGCTGTCCCGCCAACGCC
ACGCCGAGCCGCAATTACTGGATCTGAAGATCTGGCTGGAACAGTTTGTCGAGGAGACTCGCAGTCGACTGCCCGCCCAT
CAGTCGATCCACCTGCAAATAACCCCGGCTCCGCTCACCACGCGTATGGATGCCGAGCAGTTGAATCAGGTCCTCAACAA
CCTCGTGCAAAACGCTATGCGCTACAGTGGTAAAAGCCATGAACACGCACAAGTGTGGATCCGCCTGTTTCAGGAGCCAC
GCAGTGATCAGGCGATTCTGGAAGTACTCGATGATGGACCCGGCGTCCCTCATGAACACATGACGAAAATGTTTGAACCC
TTTTTCACAACAGAGAGCAAGGGCACCGGCCTGGGTCTTTATCTTTCAAGGGAGCTTTGCGAAAGCAATCAGGCACATCT
GGACTACACATTTCGGGAAGGTGGCGGCAGTTGTCTGCGCATCACTTTTGCCCATCCGTTGAAGTTGAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

62.524

100

0.626

Multiple sequence alignment