Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABQ091_RS05955 Genome accession   NZ_CP167993
Coordinates   1355432..1356826 (-) Length   464 a.a.
NCBI ID   WP_039421901.1    Uniprot ID   A0AAJ0J1B1
Organism   Xanthomonas vesicatoria strain WHRI 8302     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1291610..1356089 1355432..1356826 flank -657


Gene organization within MGE regions


Location: 1291610..1356826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ091_RS05630 (ABQ091_005630) - 1291902..1292651 (+) 750 WP_228862419.1 3-deoxy-D-manno-octulosonic acid kinase -
  ABQ091_RS05635 (ABQ091_005635) - 1292651..1293400 (+) 750 WP_005990074.1 MBL fold metallo-hydrolase -
  ABQ091_RS05640 (ABQ091_005640) moaA 1293400..1294434 (+) 1035 WP_228862418.1 GTP 3',8-cyclase MoaA -
  ABQ091_RS05645 (ABQ091_005645) moaC 1294818..1295315 (+) 498 WP_228862417.1 cyclic pyranopterin monophosphate synthase MoaC -
  ABQ091_RS05650 (ABQ091_005650) - 1295312..1295557 (+) 246 WP_228862416.1 MoaD/ThiS family protein -
  ABQ091_RS05655 (ABQ091_005655) - 1295554..1295997 (+) 444 WP_228862415.1 molybdenum cofactor biosynthesis protein MoaE -
  ABQ091_RS05665 (ABQ091_005665) - 1297001..1297151 (+) 151 Protein_1097 integrase -
  ABQ091_RS05670 (ABQ091_005670) - 1297700..1298224 (+) 525 WP_372498142.1 hypothetical protein -
  ABQ091_RS05675 (ABQ091_005675) - 1298540..1298920 (-) 381 WP_372498124.1 hypothetical protein -
  ABQ091_RS05680 (ABQ091_005680) - 1298917..1299231 (-) 315 WP_228862414.1 hypothetical protein -
  ABQ091_RS05685 (ABQ091_005685) - 1299275..1300036 (-) 762 WP_228862413.1 hypothetical protein -
  ABQ091_RS05690 (ABQ091_005690) - 1300214..1300486 (+) 273 WP_228862412.1 helix-turn-helix transcriptional regulator -
  ABQ091_RS05695 (ABQ091_005695) - 1300584..1300742 (+) 159 WP_228431028.1 hypothetical protein -
  ABQ091_RS05700 (ABQ091_005700) - 1300846..1302681 (-) 1836 WP_228862411.1 UvrD-helicase domain-containing protein -
  ABQ091_RS05705 (ABQ091_005705) - 1302678..1305002 (-) 2325 WP_228862410.1 AAA family ATPase -
  ABQ091_RS05710 (ABQ091_005710) - 1305184..1306584 (-) 1401 WP_228862409.1 site-specific integrase -
  ABQ091_RS05715 (ABQ091_005715) - 1307130..1307354 (+) 225 WP_179455624.1 hypothetical protein -
  ABQ091_RS05720 (ABQ091_005720) - 1307750..1308229 (+) 480 WP_074052514.1 RadC family protein -
  ABQ091_RS05725 (ABQ091_005725) - 1308299..1308496 (+) 198 WP_039426261.1 hypothetical protein -
  ABQ091_RS05730 (ABQ091_005730) - 1308533..1309609 (-) 1077 WP_126936877.1 hypothetical protein -
  ABQ091_RS05735 (ABQ091_005735) - 1309979..1310620 (+) 642 WP_039426267.1 DUF1629 domain-containing protein -
  ABQ091_RS05740 (ABQ091_005740) - 1310657..1314652 (+) 3996 WP_228862408.1 hypothetical protein -
  ABQ091_RS05745 (ABQ091_005745) - 1314693..1315343 (+) 651 WP_228862407.1 hypothetical protein -
  ABQ091_RS05750 (ABQ091_005750) - 1315343..1315990 (+) 648 WP_228862406.1 hypothetical protein -
  ABQ091_RS05755 (ABQ091_005755) - 1316036..1316992 (+) 957 WP_228862405.1 hypothetical protein -
  ABQ091_RS05760 (ABQ091_005760) - 1317181..1317693 (+) 513 WP_228862404.1 hypothetical protein -
  ABQ091_RS05765 (ABQ091_005765) - 1317694..1317858 (-) 165 Protein_1117 IS3 family transposase -
  ABQ091_RS05770 (ABQ091_005770) - 1317943..1319075 (+) 1133 WP_087943130.1 IS3 family transposase -
  ABQ091_RS05775 (ABQ091_005775) - 1319119..1319583 (+) 465 WP_349786429.1 hypothetical protein -
  ABQ091_RS05780 (ABQ091_005780) - 1319870..1320094 (+) 225 WP_228861733.1 hypothetical protein -
  ABQ091_RS05785 (ABQ091_005785) - 1320429..1321544 (-) 1116 WP_228861734.1 hypothetical protein -
  ABQ091_RS05790 (ABQ091_005790) - 1321544..1322167 (-) 624 WP_209034761.1 hypothetical protein -
  ABQ091_RS05795 (ABQ091_005795) - 1322332..1322657 (+) 326 Protein_1123 RadC family protein -
  ABQ091_RS05800 (ABQ091_005800) - 1322737..1323429 (+) 693 WP_228861735.1 hypothetical protein -
  ABQ091_RS05805 (ABQ091_005805) - 1323508..1324368 (-) 861 WP_005992929.1 IS3 family transposase -
  ABQ091_RS05810 (ABQ091_005810) - 1324365..1324658 (-) 294 WP_039421683.1 transposase -
  ABQ091_RS05815 (ABQ091_005815) - 1324789..1326090 (+) 1302 WP_372498125.1 XVIPCD domain-containing protein -
  ABQ091_RS05820 (ABQ091_005820) - 1326140..1326394 (-) 255 WP_228861739.1 hypothetical protein -
  ABQ091_RS05825 (ABQ091_005825) - 1326663..1328258 (+) 1596 WP_349785117.1 MobA/MobL family protein -
  ABQ091_RS05830 (ABQ091_005830) - 1328311..1328652 (-) 342 WP_228862183.1 hypothetical protein -
  ABQ091_RS05835 (ABQ091_005835) - 1329710..1330255 (+) 546 WP_228862182.1 STN domain-containing protein -
  ABQ091_RS05840 (ABQ091_005840) - 1330207..1330677 (-) 471 WP_228862181.1 hypothetical protein -
  ABQ091_RS05845 (ABQ091_005845) - 1330690..1331081 (+) 392 Protein_1133 hypothetical protein -
  ABQ091_RS05850 (ABQ091_005850) - 1331169..1331561 (+) 393 WP_005992814.1 H-NS family nucleoid-associated regulatory protein -
  ABQ091_RS05855 (ABQ091_005855) glgX 1332087..1334219 (-) 2133 WP_005992816.1 glycogen debranching protein GlgX -
  ABQ091_RS05860 (ABQ091_005860) rimK 1334702..1335607 (+) 906 WP_167370487.1 30S ribosomal protein S6--L-glutamate ligase -
  ABQ091_RS05865 (ABQ091_005865) - 1335809..1336303 (+) 495 WP_228862180.1 hypothetical protein -
  ABQ091_RS05870 (ABQ091_005870) - 1336334..1337011 (+) 678 WP_003490678.1 response regulator transcription factor -
  ABQ091_RS05875 (ABQ091_005875) - 1337004..1338338 (+) 1335 WP_005992823.1 HAMP domain-containing sensor histidine kinase -
  ABQ091_RS05880 (ABQ091_005880) - 1338477..1338779 (-) 303 WP_228999094.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ABQ091_RS05885 (ABQ091_005885) - 1338776..1338961 (-) 186 WP_104564362.1 hypothetical protein -
  ABQ091_RS05890 (ABQ091_005890) - 1339057..1339461 (-) 405 WP_228862178.1 SymE family type I addiction module toxin -
  ABQ091_RS05895 (ABQ091_005895) - 1339858..1340319 (-) 462 WP_228862177.1 hypothetical protein -
  ABQ091_RS05900 (ABQ091_005900) - 1340321..1344313 (-) 3993 WP_228862176.1 RHS repeat-associated core domain-containing protein -
  ABQ091_RS05905 (ABQ091_005905) coaE 1344884..1345495 (-) 612 WP_228862175.1 dephospho-CoA kinase -
  ABQ091_RS05910 (ABQ091_005910) - 1345509..1346372 (-) 864 WP_039519369.1 A24 family peptidase -
  ABQ091_RS05915 (ABQ091_005915) pilC 1346379..1347641 (-) 1263 WP_039421892.1 type II secretion system F family protein Machinery gene
  ABQ091_RS05920 (ABQ091_005920) - 1347750..1349711 (-) 1962 WP_229016255.1 hypothetical protein -
  ABQ091_RS05925 (ABQ091_005925) - 1349778..1350194 (-) 417 WP_039421894.1 pilin -
  ABQ091_RS05930 (ABQ091_005930) - 1350278..1350919 (+) 642 WP_349785108.1 EamA family transporter -
  ABQ091_RS05935 (ABQ091_005935) - 1350924..1351718 (+) 795 WP_039421896.1 glycosyltransferase family A protein -
  ABQ091_RS05940 (ABQ091_005940) - 1351715..1352761 (+) 1047 WP_052318575.1 glycosyltransferase family 2 protein -
  ABQ091_RS05945 (ABQ091_005945) - 1352754..1353353 (+) 600 WP_039427843.1 methionine biosynthesis protein MetW -
  ABQ091_RS05950 (ABQ091_005950) pilB 1353493..1355226 (+) 1734 WP_039421899.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABQ091_RS05955 (ABQ091_005955) pilR 1355432..1356826 (-) 1395 WP_039421901.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50157.58 Da        Isoelectric Point: 6.4414

>NTDB_id=1040961 ABQ091_RS05955 WP_039421901.1 1355432..1356826(-) (pilR) [Xanthomonas vesicatoria strain WHRI 8302]
MSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1040961 ABQ091_RS05955 WP_039421901.1 1355432..1356826(-) (pilR) [Xanthomonas vesicatoria strain WHRI 8302]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACTGCAGCCAACCTGGCCGAAGCGCGCGAACTATTGGCCAGCAATCCCTACGATCTGTGCCTGA
CCGACATGCGGCTGCCTGACGGTAACGGCATCGAACTGGTCACCGAAATCGCAAAGCACTACCCCCAAACCCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGATCTGGCCGTGGAGGCCTTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGTGGCCTGGTCAAACACGCGCTGGAATTGAACAACCGCGACCGCCCTGCACCGCCCCCGCCGC
CGCCCGAACAGGCCAGCCGCCTGCTTGGCGATTCGACCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTCGCACGC
AGCCAGGCGCCGGTGTATATCGTCGGCGAGTCCGGCGTGGGCAAGGAGCTGGTCGCCCGCACCATCCACGAGCAAGGCGC
CCGCGCTGCCGGCCCGTTCGTGCCGGTGAACTGCGGCGCCATTCCCGCCGAACTGATGGAAAGCGAGTTCTTCGGGCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCTGCACACGGCGGCACGTTGTTCCTGGAC
GAAGTGGCCGAGTTGCCGCTGCAGATGCAGGTCAAATTGCTGCGCGCGATCCAGGAAAAATCGGTCCGCCCAGTCGGCGC
CTCCGGCGAAACGCTGGTAGACGTGCGCATCCTCTCGGCCACGCATAAGGATCTCGGCGACCTGGTCTCCGACGGCCGCT
TCCGCCACGACCTCTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCGGTGGCGATCTACCG
CAACTCGCTGCGGCCATCATTGCGCGCCTTGCACGCAGCCACGGCCGGCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
CGCACTGGATACCTACGGCTTCCCGGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGAGGCCACCGCCTGGCCGCAACGCCAGGCAGCGCCGCG
GTCGAACCGCGCGAAGCCGTGGTCGACATCGACCCCGCGTCCTCTGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTTGAGGAGAATCGCTGGAACAAGACCAAGACCGCCGCCCAGCTGGGTATCACGTTTCGGGCCT
TGCGCTACAAGTTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.283

99.784

0.631
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489

Multiple sequence alignment