Detailed information NTG1040689

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACDI95_RS01545
• Genome accession: NZ_CP167979
• Coordinates: 331620..332420 (-)
• Length: 266 a.a.
• NCBI ID: WP_004213441.1
• Uniprot ID: A0A9Q4U0T4
• Organism: Klebsiella pneumoniae strain LA63
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 326620..337420

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACDI95_RS01525 (ACDI95_01525)	dksA	327200..327655 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ACDI95_RS01530 (ACDI95_01530)	sfsA	327818..328534 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ACDI95_RS01535 (ACDI95_01535)	thpR	328534..329070 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ACDI95_RS01540 (ACDI95_01540)	hrpB	329143..331572 (+)	2430	WP_004213442.1	ATP-dependent helicase HrpB	-
ACDI95_RS01545 (ACDI95_01545)	pilD	331620..332420 (-)	801	WP_004213441.1	A24 family peptidase	Machinery gene
ACDI95_RS01550 (ACDI95_01550)	-	332417..333163 (-)	747	WP_004145897.1	type II secretion system protein N	-
ACDI95_RS01555 (ACDI95_01555)	-	333153..333638 (-)	486	WP_004151943.1	type II secretion system protein M	-
ACDI95_RS01560 (ACDI95_01560)	gspL	333631..334824 (-)	1194	WP_004213440.1	type II secretion system protein GspL	-
ACDI95_RS01565 (ACDI95_01565)	gspK	334811..335797 (-)	987	WP_004213439.1	type II secretion system minor pseudopilin GspK	-
ACDI95_RS01570 (ACDI95_01570)	gspJ	335794..336390 (-)	597	WP_022615423.1	type II secretion system minor pseudopilin GspJ	-
ACDI95_RS01575 (ACDI95_01575)	gspI	336387..336752 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACDI95_RS01580 (ACDI95_01580)	gspH	336749..337264 (-)	516	WP_004213437.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29405.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1040689 ACDI95_RS01545 WP_004213441.1 331620..332420(-) (pilD) [Klebsiella pneumoniae strain LA63]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1040689 ACDI95_RS01545 WP_004213441.1 331620..332420(-) (pilD) [Klebsiella pneumoniae strain LA63]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425