Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   KJP57_RS08445 Genome accession   NZ_OX419573
Coordinates   1590691..1591713 (+) Length   340 a.a.
NCBI ID   WP_128737829.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6085     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1585691..1596713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP57_RS08410 (NRS6085_08395) ylbE 1585991..1586230 (+) 240 WP_003232231.1 YlbE-like family protein -
  KJP57_RS08415 (NRS6085_08400) ylbF 1586346..1586795 (+) 450 WP_213407722.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  KJP57_RS08420 (NRS6085_08405) ylbG 1586850..1587122 (+) 273 WP_009967171.1 YlbG family protein -
  KJP57_RS08425 (NRS6085_08410) rsmD 1587445..1587999 (+) 555 WP_213407723.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KJP57_RS08430 (NRS6085_08415) coaD 1588004..1588489 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  KJP57_RS08435 (NRS6085_08420) spoVV 1588500..1589726 (-) 1227 WP_128737828.1 dipicolinic acid transporter SpoVV -
  KJP57_RS08440 (NRS6085_08425) ylbK 1589907..1590689 (+) 783 WP_003232221.1 patatin family protein -
  KJP57_RS08445 (NRS6085_08430) sepM 1590691..1591713 (+) 1023 WP_128737829.1 protease DdcP Regulator
  KJP57_RS08450 (NRS6085_08435) - 1591904..1592353 (-) 450 WP_128737830.1 hypothetical protein -
  KJP57_RS08455 (NRS6085_08440) - 1592426..1593658 (-) 1233 WP_213407724.1 nucleotidyltransferase -
  KJP57_RS08460 (NRS6085_08445) - 1593655..1593840 (-) 186 WP_003232215.1 hypothetical protein -
  KJP57_RS08465 (NRS6085_08450) ylbN 1593868..1594386 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  KJP57_RS08470 (NRS6085_08455) rpmF 1594408..1594587 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  KJP57_RS08475 (NRS6085_08460) gerR 1594733..1595314 (+) 582 WP_014479720.1 sporulation specific transcriptional regulator GerR -
  KJP57_RS08480 (NRS6085_08465) ylbP 1595371..1595853 (-) 483 WP_014476736.1 N-acetyltransferase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37550.13 Da        Isoelectric Point: 6.5347

>NTDB_id=1040596 KJP57_RS08445 WP_128737829.1 1590691..1591713(+) (sepM) [Bacillus subtilis isolate NRS6085]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKS

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=1040596 KJP57_RS08445 WP_128737829.1 1590691..1591713(+) (sepM) [Bacillus subtilis isolate NRS6085]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTCCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCAATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCTGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGTTAA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.403