Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   KJP57_RS08415 Genome accession   NZ_OX419573
Coordinates   1586346..1586795 (+) Length   149 a.a.
NCBI ID   WP_213407722.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6085     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1581346..1591795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP57_RS08375 (NRS6085_08360) ctaE 1581361..1581984 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  KJP57_RS08380 (NRS6085_08365) ctaF 1581987..1582319 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  KJP57_RS08385 (NRS6085_08370) ctaG 1582347..1583240 (+) 894 WP_033883825.1 cytochrome c oxidase assembly factor CtaG -
  KJP57_RS08390 (NRS6085_08375) ylbA 1583272..1583634 (-) 363 WP_003232238.1 YugN family protein -
  KJP57_RS08395 (NRS6085_08380) ylbB 1583774..1584220 (+) 447 WP_003221362.1 CBS domain-containing protein -
  KJP57_RS08400 (NRS6085_08385) ylbC 1584304..1585344 (+) 1041 WP_076457749.1 CAP domain-containing protein -
  KJP57_RS08405 (NRS6085_08390) ylbD 1585577..1585975 (+) 399 WP_213407721.1 YlbD family protein -
  KJP57_RS08410 (NRS6085_08395) ylbE 1585991..1586230 (+) 240 WP_003232231.1 YlbE-like family protein -
  KJP57_RS08415 (NRS6085_08400) ylbF 1586346..1586795 (+) 450 WP_213407722.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  KJP57_RS08420 (NRS6085_08405) ylbG 1586850..1587122 (+) 273 WP_009967171.1 YlbG family protein -
  KJP57_RS08425 (NRS6085_08410) rsmD 1587445..1587999 (+) 555 WP_213407723.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KJP57_RS08430 (NRS6085_08415) coaD 1588004..1588489 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  KJP57_RS08435 (NRS6085_08420) spoVV 1588500..1589726 (-) 1227 WP_128737828.1 dipicolinic acid transporter SpoVV -
  KJP57_RS08440 (NRS6085_08425) ylbK 1589907..1590689 (+) 783 WP_003232221.1 patatin family protein -
  KJP57_RS08445 (NRS6085_08430) sepM 1590691..1591713 (+) 1023 WP_128737829.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16940.04 Da        Isoelectric Point: 4.9284

>NTDB_id=1040595 KJP57_RS08415 WP_213407722.1 1586346..1586795(+) (ylbF) [Bacillus subtilis isolate NRS6085]
MYATMESVRLQIEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1040595 KJP57_RS08415 WP_213407722.1 1586346..1586795(+) (ylbF) [Bacillus subtilis isolate NRS6085]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAATTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(13-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

99.329

100

0.993