Detailed information NTG1040208

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACCM60_RS27595
• Genome accession: NZ_CP167916
• Coordinates: 6067711..6069039 (+)
• Length: 442 a.a.
• NCBI ID: WP_009050935.1
• Uniprot ID: A0AB33WW27
• Organism: Pseudomonas chlororaphis subsp. aureofaciens strain W9-1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6062711..6074039

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACCM60_RS27575 (ACCM60_27575)	pgeF	6064210..6064935 (-)	726	WP_009050932.1	peptidoglycan editing factor PgeF	-
ACCM60_RS27580 (ACCM60_27580)	rluD	6064932..6065894 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
ACCM60_RS27585 (ACCM60_27585)	-	6066047..6067069 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
ACCM60_RS27590 (ACCM60_27590)	-	6067204..6067437 (+)	234	WP_007924721.1	PP0621 family protein	-
ACCM60_RS27595 (ACCM60_27595)	pilR	6067711..6069039 (+)	1329	WP_009050935.1	sigma-54 dependent transcriptional regulator	Regulator
ACCM60_RS27600 (ACCM60_27600)	thiO	6069036..6070136 (-)	1101	WP_009050936.1	glycine oxidase ThiO	-
ACCM60_RS27605 (ACCM60_27605)	-	6070191..6070592 (-)	402	WP_009050937.1	type IV pilin protein	-
ACCM60_RS27610 (ACCM60_27610)	-	6070606..6073677 (-)	3072	WP_372437582.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48853.37 Da
• Isoelectric Point: 9.3790

>NTDB_id=1040208 ACCM60_RS27595 WP_009050935.1 6067711..6069039(+) (pilR) [Pseudomonas chlororaphis subsp. aureofaciens strain W9-1]
MSPQQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQRHRLRMPLA
ILSTCARQETAVRVLKAGAIDFLSKPVALARLRELLNGALPKSIPPKPVTGPLLGNSTAMHKLRGQIHKLAQSQASVYIS
GESGSGKELAARAIHDQGPRASQGFVPINCGAIPPELMESEFFGHRKGSFSGAVEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVHAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENRQIEARDLQLTPNGAHPAIAPGPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=1040208 ACCM60_RS27595 WP_009050935.1 6067711..6069039(+) (pilR) [Pseudomonas chlororaphis subsp. aureofaciens strain W9-1]
ATGAGCCCACAGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAGCGCCATACCCGTAGCGCCCGCACCCTGGGTGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGCACGGGGTTGGAATTACTCGAGCATATCCAGCGCCACCGGCTGCGAATGCCACTGGCC
ATCCTCAGCACCTGCGCCCGCCAGGAAACCGCGGTCCGGGTCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCCCGCTTGCGCGAGCTACTGAACGGCGCCCTGCCCAAATCGATACCACCGAAGCCTGTTACTGGCCCCTTGC
TGGGCAATTCGACCGCCATGCACAAACTGCGTGGACAGATCCACAAACTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAACTGGCCGCCCGCGCGATCCACGACCAGGGACCACGGGCCAGCCAGGGCTTCGTGCC
GATCAACTGCGGGGCTATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCG
TCGAAGACAAACCCGGCCTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCACTGGCA
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGACAGCAGGAGGTCCAGGTTGATGT
GCGCATTCTCTGCGCCACCCACAAGACGCTGCAGGCGGAAGTGCATGCCGGACGCTTTCGCCAGGATCTCTACTACCGCC
TCAACGTGATCGAACTGGCGGTGCCACCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACAGCCATCCTCGAG
CGCCTGGCACAGGGCAACGGCCAACAGTTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGACC
TGCAACTGACACCAAACGGCGCACACCCGGCCATCGCGCCCGGCCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Sigma-54 interaction domain (Sigma54_activat) (133-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.366	100	0.665
pilR	Acinetobacter baumannii strain A118	43.562	100	0.459