Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   ACDW34_RS04585 Genome accession   NZ_CP167896
Coordinates   959291..963799 (+) Length   1502 a.a.
NCBI ID   WP_372404102.1    Uniprot ID   -
Organism   Acinetobacter piscicola strain p38     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 954291..968799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDW34_RS04560 (ACDW34_04560) - 954797..955441 (-) 645 WP_372404101.1 hypothetical protein -
  ACDW34_RS04565 (ACDW34_04565) pilG 955723..956100 (+) 378 WP_130073892.1 twitching motility response regulator PilG Regulator
  ACDW34_RS04570 (ACDW34_04570) - 956127..956495 (+) 369 WP_130073891.1 response regulator -
  ACDW34_RS04575 (ACDW34_04575) - 956498..957031 (+) 534 WP_130073890.1 chemotaxis protein CheW -
  ACDW34_RS04580 (ACDW34_04580) - 957081..959153 (+) 2073 WP_130073889.1 methyl-accepting chemotaxis protein -
  ACDW34_RS04585 (ACDW34_04585) chpA 959291..963799 (+) 4509 WP_372404102.1 Hpt domain-containing protein Regulator
  ACDW34_RS04590 (ACDW34_04590) - 963806..964270 (+) 465 WP_372404103.1 hypothetical protein -
  ACDW34_RS04595 (ACDW34_04595) dapE 964316..965449 (-) 1134 WP_130073886.1 succinyl-diaminopimelate desuccinylase -
  ACDW34_RS04600 (ACDW34_04600) - 965599..965739 (-) 141 WP_130074048.1 entericidin A/B family lipoprotein -
  ACDW34_RS04605 (ACDW34_04605) - 965858..966724 (-) 867 WP_286435897.1 DUF1853 family protein -
  ACDW34_RS04610 (ACDW34_04610) - 966801..967169 (+) 369 WP_286435895.1 YbaN family protein -

Sequence


Protein


Download         Length: 1502 a.a.        Molecular weight: 169781.01 Da        Isoelectric Point: 4.4459

>NTDB_id=1040165 ACDW34_RS04585 WP_372404102.1 959291..963799(+) (chpA) [Acinetobacter piscicola strain p38]
MKKILKDLVENINLPQDEFVDQDPEILEIFVEEIEEIIENVQPLLTQWLSEPSDAELLTVIRRNFHTLKGSGRMVGAKSS
GELAWTVEDTLNRVIAKSLSLSQPLQQYVNAVFNIYKFKLHDDFAKAQAHQLDLRPLVLLGQQIQQNLSIEPALEELLAL
SAQLNSADVLTGLEYSTTDDAAEVIAQAKPTTAMVEPVIPESPVTMPEQPEVISSEKTSLENHKEAVDEAEDRRFLAETI
AIFIEESEEHLASIDTFLSIEQHTADHYNRLIRALHTLRGSSAMAHVDDVFHASSKVEQLFKILLKDDTQHSTNENALLI
HYTEFVRDYLHTLVQENSSEQQKVICQKFNDAWERYDFQTEYLESNEHQQDLVSQLVDLNIEHLLDAEFDFDQKAKVEYP
AYFESLMREADVLIEYTDNRAAQGIHDISLALKVAYEHILADQRLLNTDYVFELFNQVHQEFIHLFDALASGQRVVLNEN
GQHVLEQLYDYVTQDIEQIEAVDSAQTESLETVDLETITVPETAATAEFNSNQIFNLIAKDQQYLHSADSFKDFDAEVLD
IFLEEADELLVGIDQDLTVWFSDSQNLTSLNNLMRYLHTLKGGANMVQAEHIGLIAHHLESIYERIIKQQIPVNTALMQT
IRMVQDEIAERIQVIREQGIDYPAVHLLGLLQAIEKQQPIKLAFDTSDEPSAVAEPEHVGQSDSIQQFEAQAPVDEVGSV
AAIQNDSSVENVAQDAFTEEAEELLARADDILDQWFDERSSRSLLLQLQRIAHTLKGGAKMVGYTQISDIAYELENTFER
FGLHNFNSNAYDQLLSKAFNWLKNAILSNNYEHFDSIKTGLKNIQYVDVSAQLPEKIISNDIFWHNQSVEFIQGDGTEPP
SMLGEWGQVEQVENSNEMIRISADLIEKMIDLSGENSINRSRIEMDLGQFGNTLSEMELAIQRLADQLRRMEGELESQII
AKHGDSNSRYADFDPLEMDQYSSLNQLSKSLAESASDLVDFKSTLAEKIRDTEGLLLQQARIQAEIQEGLMRTRLVPFTR
LLPRLQRLVRQTASSLNRPTELIVHNTEGELDRNILEKLMSPLEHMLRNAIDHGIEETSIREQCNKPATGRIELNISRQG
TDVLVEFKDDGKGIDPKIIKAKALQNGLIQADQSVSDEEILQYIFHHGFSTAQQVTQISGRGVGLDVVQSEIKSLGGQVS
VSSVLGQGSTFTIRVPTTVAVSDALMVKVGDQQFAVPLSQIDRIVRIAPSTLEEYFHSNKEDFVIDQQRYNLRYMAEFVA
HQPMPRFSGIAHSLPVLLIKNNSGKNTALLVDQLIGSRSQIVVKPIGKQFTSIGAVAGATILGDGQVCLILDAQNIARQA
LSNKRQAANDQRELTRHRDQRHLVMIVDDSVTVRKVTSRLLERHNFDVITAKDGVDAIEQLENVKPDLMLLDIEMPRMDG
FEVTNWIRHHEIHHELPIIMITSRTGEKHRERAFSLGVTNYMGKPFQEADLLENIQNLLVAQ

Nucleotide


Download         Length: 4509 bp        

>NTDB_id=1040165 ACDW34_RS04585 WP_372404102.1 959291..963799(+) (chpA) [Acinetobacter piscicola strain p38]
ATGAAAAAAATATTAAAAGATTTAGTTGAAAATATAAATCTTCCCCAAGACGAATTTGTGGACCAAGATCCTGAAATTTT
AGAAATCTTTGTGGAAGAGATCGAAGAGATTATCGAAAATGTTCAGCCGTTGTTAACACAATGGTTAAGTGAACCGTCAG
ATGCTGAACTTTTGACTGTAATTCGCCGTAATTTCCATACTTTGAAAGGGTCTGGTCGTATGGTGGGCGCAAAGTCATCA
GGTGAGTTGGCTTGGACGGTTGAAGATACATTAAATCGTGTGATTGCTAAAAGTTTGAGTTTATCTCAACCATTACAGCA
ATATGTCAATGCGGTATTTAATATTTATAAATTTAAGCTGCATGATGATTTTGCCAAAGCACAAGCGCATCAGTTAGATT
TAAGACCTTTGGTTTTGTTGGGACAACAGATTCAACAAAATTTGAGTATTGAGCCAGCACTTGAAGAATTACTTGCACTT
TCAGCGCAATTAAATAGTGCAGATGTTTTGACAGGCTTAGAATATTCTACAACTGATGATGCGGCTGAGGTTATAGCACA
AGCAAAACCAACGACTGCTATGGTAGAGCCTGTAATTCCTGAAAGTCCTGTGACTATGCCAGAACAACCAGAAGTTATTT
CGTCTGAAAAAACTTCACTTGAGAATCACAAGGAGGCGGTTGACGAAGCTGAGGATCGTCGATTTCTGGCCGAGACTATT
GCAATCTTTATTGAAGAGTCTGAAGAACATCTGGCGTCAATTGACACGTTCTTAAGTATTGAACAGCATACCGCAGATCA
CTATAACCGTTTGATTCGTGCATTACACACCTTGCGTGGTAGTTCAGCGATGGCGCATGTGGATGATGTATTTCATGCGA
GTAGTAAAGTTGAACAATTATTTAAAATTTTGTTAAAAGACGATACACAGCATAGCACCAACGAAAATGCACTTTTAATA
CATTATACTGAATTTGTTCGAGATTATTTGCATACACTGGTGCAAGAAAATAGTTCAGAACAACAAAAAGTTATTTGTCA
AAAGTTTAATGATGCTTGGGAACGTTATGATTTCCAAACTGAATATTTAGAAAGTAATGAGCATCAGCAAGATCTCGTTT
CTCAACTGGTTGACTTAAATATTGAGCATTTGCTTGATGCTGAATTTGATTTTGATCAAAAAGCCAAAGTTGAATATCCA
GCATATTTTGAAAGCTTAATGCGTGAAGCTGATGTATTAATTGAATATACAGACAACCGCGCAGCACAAGGTATTCATGA
TATTAGCTTGGCATTAAAAGTTGCTTATGAACATATATTGGCTGATCAACGTTTACTGAATACAGATTATGTATTTGAGC
TGTTTAATCAAGTACATCAAGAGTTTATTCATCTATTTGATGCATTAGCATCTGGTCAACGCGTCGTTTTAAATGAAAAT
GGTCAACATGTTTTAGAACAATTGTATGACTATGTTACACAAGACATTGAACAGATTGAAGCTGTGGATTCTGCACAGAC
AGAGTCACTTGAAACTGTAGATTTGGAAACGATCACTGTTCCTGAAACTGCAGCGACAGCTGAATTTAATAGCAATCAAA
TCTTTAATCTGATTGCAAAAGATCAGCAATATTTACATTCTGCCGATAGTTTTAAAGACTTTGATGCTGAGGTCTTGGAT
ATTTTCCTTGAAGAAGCAGATGAGCTGTTGGTGGGGATTGATCAGGATTTAACGGTATGGTTCTCTGATAGCCAAAATCT
GACGTCATTAAATAATTTGATGCGTTATTTGCATACCTTAAAGGGTGGTGCGAATATGGTACAAGCAGAGCATATTGGTC
TGATTGCCCATCATTTAGAATCAATTTATGAACGAATTATTAAGCAACAAATTCCTGTAAATACGGCGTTGATGCAAACC
ATTCGTATGGTTCAGGATGAAATTGCAGAACGTATTCAAGTGATTCGTGAACAAGGGATTGATTATCCAGCTGTTCATCT
TTTAGGTCTTTTGCAAGCCATTGAAAAGCAACAGCCGATCAAACTTGCATTCGATACATCGGATGAGCCTTCTGCCGTTG
CAGAGCCTGAACATGTAGGGCAGTCTGATTCTATTCAGCAATTTGAAGCACAGGCGCCAGTTGATGAAGTGGGATCTGTC
GCTGCGATACAAAATGATTCTTCAGTCGAAAATGTGGCACAAGATGCTTTTACAGAAGAAGCTGAAGAATTATTGGCACG
TGCTGATGATATTTTAGATCAATGGTTTGATGAGCGTAGTAGTCGTAGTCTATTATTGCAATTACAACGTATTGCCCACA
CTTTAAAAGGTGGTGCAAAAATGGTTGGTTATACACAAATATCTGATATTGCATATGAATTAGAAAATACATTTGAACGT
TTTGGTTTGCATAATTTCAACTCAAATGCTTATGATCAGTTATTGAGTAAAGCATTTAATTGGTTGAAAAATGCCATTTT
GTCGAATAATTATGAGCATTTTGATTCGATCAAAACGGGTCTTAAAAATATTCAGTATGTTGATGTATCGGCACAATTAC
CTGAAAAAATAATTAGCAATGATATCTTTTGGCATAATCAGAGCGTTGAGTTTATTCAAGGTGATGGTACTGAACCACCA
TCAATGTTGGGTGAATGGGGGCAAGTTGAGCAAGTTGAAAACAGCAATGAGATGATTCGTATCTCGGCAGACTTGATTGA
AAAAATGATCGATTTGTCGGGTGAGAACTCAATTAACCGTTCACGTATTGAAATGGATTTGGGGCAGTTTGGTAATACGC
TGTCGGAAATGGAATTGGCGATTCAACGTTTGGCAGATCAGTTACGCCGAATGGAAGGGGAATTAGAGTCACAAATTATT
GCTAAGCATGGTGATTCAAATTCACGTTATGCTGATTTTGATCCACTTGAAATGGACCAATATTCTTCTTTAAATCAGTT
ATCTAAGTCACTTGCCGAATCTGCATCGGACTTGGTGGATTTTAAGAGTACATTGGCTGAAAAAATTCGTGATACAGAAG
GTTTATTGTTACAACAAGCACGTATTCAAGCTGAAATTCAAGAAGGTTTAATGCGTACTCGTTTGGTACCATTTACCCGC
TTATTACCACGTTTACAACGTTTGGTGCGCCAAACGGCTTCAAGTTTAAACCGACCAACCGAGTTGATTGTACATAATAC
AGAAGGTGAACTGGATCGTAATATTCTTGAAAAGCTCATGTCTCCATTAGAACACATGTTACGTAATGCAATTGACCATG
GTATTGAAGAAACGTCTATTCGCGAGCAATGTAATAAGCCTGCCACAGGACGCATTGAGCTGAATATTAGTCGTCAAGGT
ACAGATGTCTTGGTTGAGTTTAAGGATGATGGAAAGGGAATTGATCCGAAAATCATCAAAGCCAAAGCATTGCAAAATGG
TTTGATTCAAGCTGATCAAAGCGTGTCTGATGAAGAAATATTGCAATATATTTTTCATCATGGCTTCAGTACTGCGCAAC
AAGTTACTCAGATTTCTGGGCGTGGTGTTGGATTGGATGTGGTACAAAGTGAAATTAAGTCACTTGGTGGGCAAGTCTCA
GTGTCTTCGGTACTTGGTCAAGGTTCAACTTTTACCATTCGTGTGCCAACTACTGTTGCAGTGAGTGATGCCTTGATGGT
GAAAGTGGGTGATCAGCAATTTGCTGTACCATTATCGCAAATTGATCGTATTGTACGTATTGCACCAAGTACCTTGGAAG
AATATTTCCATAGTAATAAAGAAGACTTTGTCATCGATCAGCAACGCTATAACTTGCGTTATATGGCTGAGTTTGTGGCA
CACCAACCGATGCCACGTTTCTCTGGTATTGCCCACTCTTTACCTGTGTTACTCATTAAAAATAACAGTGGTAAAAATAC
AGCATTATTGGTCGATCAGTTGATTGGTTCACGCTCACAGATTGTTGTAAAACCAATTGGCAAGCAATTTACATCAATTG
GCGCTGTGGCCGGTGCAACAATTTTGGGTGATGGTCAAGTCTGTTTAATTTTAGATGCACAAAATATTGCACGTCAGGCT
TTGAGTAATAAACGTCAAGCAGCGAATGATCAACGAGAGTTAACGCGTCACCGTGATCAGCGTCATTTGGTAATGATTGT
GGATGACTCAGTGACAGTACGTAAAGTGACTTCGCGTTTGCTTGAACGTCATAACTTTGATGTCATCACTGCCAAAGATG
GTGTAGATGCTATTGAGCAGTTGGAAAATGTCAAACCAGACTTAATGTTGCTTGATATTGAAATGCCACGTATGGATGGT
TTTGAGGTGACCAATTGGATTCGCCACCATGAAATTCATCATGAGTTGCCAATCATTATGATTACTTCAAGAACAGGTGA
AAAACATCGTGAACGTGCATTTAGTTTAGGTGTGACGAATTATATGGGTAAACCATTCCAAGAAGCTGATTTGTTGGAAA
ATATTCAGAATTTGTTGGTTGCACAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

57.64

100

0.595


Multiple sequence alignment