Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACDW34_RS02450 Genome accession   NZ_CP167896
Coordinates   530482..531117 (-) Length   211 a.a.
NCBI ID   WP_372403943.1    Uniprot ID   -
Organism   Acinetobacter piscicola strain p38     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 525482..536117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDW34_RS02415 (ACDW34_02415) mlaE 525563..526342 (+) 780 WP_130074320.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  ACDW34_RS02420 (ACDW34_02420) - 526342..527019 (+) 678 WP_372403941.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ACDW34_RS02425 (ACDW34_02425) - 527042..527674 (+) 633 WP_130074322.1 phospholipid-binding protein MlaC -
  ACDW34_RS02430 (ACDW34_02430) - 527696..527983 (+) 288 WP_130074323.1 lipid asymmetry maintenance protein MlaB -
  ACDW34_RS02435 (ACDW34_02435) - 528142..529155 (-) 1014 WP_130074324.1 CorA family divalent cation transporter -
  ACDW34_RS02440 (ACDW34_02440) - 529311..529928 (+) 618 WP_372403942.1 TIGR00730 family Rossman fold protein -
  ACDW34_RS02445 (ACDW34_02445) - 530036..530428 (+) 393 WP_286434842.1 NUDIX domain-containing protein -
  ACDW34_RS02450 (ACDW34_02450) comF 530482..531117 (-) 636 WP_372403943.1 ComF family protein Machinery gene
  ACDW34_RS02455 (ACDW34_02455) recG 531394..533439 (-) 2046 WP_372403944.1 ATP-dependent DNA helicase RecG -
  ACDW34_RS02460 (ACDW34_02460) - 533499..534251 (+) 753 WP_372403945.1 NAD-dependent epimerase/dehydratase family protein -
  ACDW34_RS02465 (ACDW34_02465) - 534327..534839 (+) 513 WP_372403946.1 alpha-ketoglutarate-dependent dioxygenase AlkB -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24592.76 Da        Isoelectric Point: 9.3579

>NTDB_id=1040158 ACDW34_RS02450 WP_372403943.1 530482..531117(-) (comF) [Acinetobacter piscicola strain p38]
MLQFINQILYKGIQSISPCLLCGIDRQQQHSLCNDCWEQLPWFKQHTIRHEQNILCAHYYDFPINRIIQTYKYEQQLQYQ
NLLAHSLLNLRLPKVQAIVPMPTSTERLKDRGYNQMLLIAKIMARELKVPVWQPVIRAAQHSQKGLSRIERLENIENQFQ
IIPAEKRKYKKVLIIDDVVTTGSSIHALNQALEKLGCQQIYNVCIAVAGTK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1040158 ACDW34_RS02450 WP_372403943.1 530482..531117(-) (comF) [Acinetobacter piscicola strain p38]
ATGCTCCAATTTATCAACCAAATACTCTACAAAGGCATACAAAGCATTTCTCCTTGCCTACTTTGCGGTATCGACCGTCA
GCAACAGCATTCACTCTGCAATGATTGCTGGGAACAACTTCCGTGGTTTAAACAACATACTATACGCCATGAACAAAATA
TCCTTTGCGCACATTACTATGATTTTCCAATCAATCGCATTATTCAAACCTATAAATACGAACAACAACTGCAATATCAA
AACTTACTTGCTCACAGTCTTTTAAATTTAAGACTTCCAAAAGTCCAAGCCATCGTGCCCATGCCAACTTCTACAGAACG
CTTAAAAGATCGTGGCTATAACCAAATGCTGCTCATTGCCAAAATTATGGCAAGAGAACTCAAAGTCCCTGTCTGGCAAC
CTGTGATTCGTGCAGCACAACATTCACAAAAAGGTTTAAGTCGGATTGAACGACTAGAAAATATTGAAAACCAATTTCAA
ATCATCCCCGCTGAAAAACGAAAATATAAAAAAGTATTGATTATTGATGATGTAGTGACGACAGGAAGTTCAATTCATGC
ACTCAACCAAGCACTAGAAAAATTAGGTTGTCAGCAGATTTATAATGTATGTATCGCTGTTGCTGGAACAAAATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

58.768

100

0.588
  comF Acinetobacter baumannii D1279779

58.294

100

0.583

Multiple sequence alignment