Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ACDW34_RS02205 Genome accession   NZ_CP167896
Coordinates   482704..484944 (-) Length   746 a.a.
NCBI ID   WP_372403924.1    Uniprot ID   -
Organism   Acinetobacter piscicola strain p38     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 477704..489944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDW34_RS02185 (ACDW34_02185) - 477729..478694 (-) 966 WP_130074277.1 DnaJ C-terminal domain-containing protein -
  ACDW34_RS02190 (ACDW34_02190) - 478986..479438 (-) 453 WP_180046831.1 DUF2147 domain-containing protein -
  ACDW34_RS02195 (ACDW34_02195) - 479568..480443 (-) 876 WP_286435145.1 Hsp33 family molecular chaperone HslO -
  ACDW34_RS02200 (ACDW34_02200) - 480517..482400 (-) 1884 WP_174493411.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  ACDW34_RS02205 (ACDW34_02205) priA 482704..484944 (-) 2241 WP_372403924.1 primosomal protein N' Machinery gene
  ACDW34_RS02210 (ACDW34_02210) gspF 485109..486314 (+) 1206 WP_130074282.1 type II secretion system inner membrane protein GspF -
  ACDW34_RS02215 (ACDW34_02215) gspG 486362..486799 (+) 438 WP_130074283.1 type II secretion system major pseudopilin GspG -
  ACDW34_RS02220 (ACDW34_02220) - 487073..487408 (+) 336 WP_180046823.1 hypothetical protein -
  ACDW34_RS02225 (ACDW34_02225) lnt 487488..489047 (-) 1560 WP_372403925.1 apolipoprotein N-acyltransferase -
  ACDW34_RS02230 (ACDW34_02230) - 489044..489883 (-) 840 WP_217431197.1 HlyC/CorC family transporter -

Sequence

Protein


Download         Length: 746 a.a.        Molecular weight: 84961.32 Da        Isoelectric Point: 8.7825

>NTDB_id=1040157 ACDW34_RS02205 WP_372403924.1 482704..484944(-) (priA) [Acinetobacter piscicola strain p38]
MPNSVNATSPVSEPTIYRVRVAVPVFLYDHFDYKVTAEQYAQADVGMRVAVSFGRQKLVAIITEKLAIDEPLDPRFQLKF
VTEFLDDRPILNEKVLSLLTWAAQYYQFPIGEVMHTALPTLLRQGKPYNLLARVWKVLDLHAEDKVKRSEKQQDAYKILK
LHPQGTQENILNLSGIETATLKALEKKEIIVCDLEPQNFKPEPVRLAQMPLTANDEQKKAIQTILKAQKKYQAFLLDGLT
GSGKTEVYLQVMQEVLKQGKQVLVLVPEIGLTPQTVSRFQSRFHCNIALLHSGLNDSKRLQAWQHTETGKASIILGTRSA
IFTPMPNLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSIDSYCLVQQGKLTRLELNQRAGTAVM
PKMHVIDLKISKKTAGLSEQLISEIGKRLEKKEQVLIFLNRRGYAPVLICESCGWQANCPHCDAHFTLHLKPYSHLHCHH
CGTINRLPDACPECQQETLKPIGMGTAKVEEALNELFPKYPVLRVDRDSTSRVGSWQKIYDQIQKSEPTILLGTQMLAKG
HHFPYVTLVAILDIDAGLLSVDFRATERTAQLIVQVAGRSGRGEKKGDVYLQTLRPEHPLLNILLNENYRAFAKQTLADR
KIAQMPPYRYAILIRCESRVQQDNQSFLTEMTQQLRQQSEENLIDIWGPIPAPMERKAGRYQAHVVLLSHDRAKMHFYVR
QWWQYVLQQKPSQMKLTIDVDPQELS

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=1040157 ACDW34_RS02205 WP_372403924.1 482704..484944(-) (priA) [Acinetobacter piscicola strain p38]
ATGCCAAACTCTGTAAATGCCACCTCGCCTGTATCCGAACCCACCATCTACCGTGTACGCGTTGCTGTACCCGTATTTTT
ATATGACCACTTTGACTATAAAGTAACGGCAGAGCAATATGCTCAAGCAGATGTAGGTATGCGTGTCGCTGTGTCTTTTG
GACGGCAAAAGCTTGTTGCCATTATTACTGAAAAATTAGCAATAGATGAACCACTTGACCCTCGTTTTCAACTTAAATTT
GTCACTGAATTTTTAGATGATCGTCCAATTCTAAATGAGAAAGTTTTAAGTTTGTTGACATGGGCAGCACAATATTACCA
ATTTCCAATTGGTGAAGTCATGCACACGGCTTTGCCGACATTATTGCGCCAAGGTAAACCGTACAACTTACTCGCACGTG
TTTGGAAAGTATTAGATTTACACGCCGAAGATAAAGTTAAACGCTCTGAAAAACAGCAAGATGCTTATAAAATTTTAAAA
TTACACCCTCAAGGCACACAAGAAAATATTTTAAATCTGAGCGGTATAGAAACGGCAACCTTAAAAGCGTTGGAAAAGAA
AGAAATCATTGTCTGTGATTTAGAGCCACAAAACTTTAAACCTGAGCCTGTTCGTTTGGCACAAATGCCACTCACAGCAA
ATGATGAGCAGAAAAAAGCCATTCAAACCATTTTAAAAGCTCAAAAAAAATATCAAGCATTTTTACTCGATGGTTTGACA
GGCAGTGGGAAAACTGAAGTCTATCTGCAAGTTATGCAAGAGGTCTTAAAGCAAGGCAAACAAGTACTCGTACTAGTGCC
CGAAATCGGTTTAACACCGCAAACCGTCAGCCGTTTCCAATCTCGTTTTCACTGCAATATTGCGCTGTTACACTCAGGTT
TAAATGATAGTAAACGCTTACAAGCATGGCAGCACACTGAAACAGGAAAAGCCTCGATTATTCTAGGAACACGTTCTGCA
ATTTTCACCCCCATGCCCAATCTGGGTTTGATTATTCTGGATGAAGAGCATGATCTTTCCTTCAAGCAACAAGAAGGTTT
TCGTTATCACGCCCGAGATGTTGCCTTGTATCGTGCACATTTGGAAAATTGTCCGATTATTTTAGGCTCTGCGACACCAA
GCATTGACAGTTATTGTTTAGTCCAACAAGGCAAACTCACTCGCTTAGAGTTAAATCAACGTGCAGGTACAGCAGTCATG
CCTAAAATGCACGTCATTGATTTAAAAATCAGTAAAAAAACCGCAGGTTTAAGCGAGCAATTGATCAGTGAAATTGGTAA
ACGTCTAGAGAAAAAAGAACAAGTTTTAATTTTTTTAAATCGACGTGGCTATGCTCCTGTCCTGATTTGTGAAAGTTGTG
GATGGCAAGCCAATTGTCCACATTGTGATGCACATTTCACCCTGCATTTAAAACCTTATTCGCATTTACATTGTCATCAT
TGTGGGACGATTAATCGCTTACCTGATGCTTGTCCTGAATGTCAGCAAGAGACCTTAAAACCGATTGGCATGGGTACAGC
CAAAGTGGAAGAAGCACTTAATGAGCTATTCCCTAAATATCCTGTACTCCGTGTCGATCGTGATTCGACGAGTCGGGTTG
GCAGTTGGCAAAAAATCTATGATCAGATCCAAAAAAGTGAACCCACCATTTTATTAGGTACACAAATGTTGGCAAAAGGA
CATCATTTTCCTTATGTCACTTTAGTGGCGATTTTGGACATCGATGCAGGTTTATTGAGTGTTGACTTTCGTGCTACAGA
ACGCACAGCGCAGTTAATTGTACAAGTGGCAGGACGTTCGGGACGTGGTGAGAAAAAGGGCGATGTTTATTTACAAACAT
TAAGACCTGAGCATCCACTATTAAATATATTATTGAATGAAAATTATCGGGCTTTTGCCAAGCAAACATTGGCAGACCGA
AAAATTGCTCAAATGCCGCCCTATCGTTACGCGATTTTGATCCGTTGTGAGTCAAGAGTTCAACAGGATAATCAAAGCTT
TTTAACGGAAATGACCCAACAATTAAGACAACAGTCAGAGGAAAATTTAATCGATATTTGGGGACCTATTCCTGCCCCTA
TGGAGCGTAAAGCAGGTCGTTATCAAGCTCATGTTGTTTTACTCTCGCATGACCGTGCCAAAATGCACTTTTATGTTCGT
CAATGGTGGCAATATGTACTTCAACAAAAACCTTCTCAAATGAAACTGACCATTGATGTCGACCCACAAGAGTTAAGCTA
A

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(215-374)

Primosomal protein N C-terminal domain (PriA_C)

(647-742)

3DNA-binding domain (3BD) (PriA_3primeBD)

(20-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

72.162

99.196

0.716

Multiple sequence alignment