Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACDW34_RS01820 Genome accession   NZ_CP167896
Coordinates   396932..398506 (-) Length   524 a.a.
NCBI ID   WP_372405038.1    Uniprot ID   -
Organism   Acinetobacter piscicola strain p38     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 391932..403506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDW34_RS01805 (ACDW34_01805) gpmI 392571..394118 (+) 1548 WP_286434639.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ACDW34_RS01810 (ACDW34_01810) - 394137..395312 (+) 1176 WP_130074490.1 S41 family peptidase -
  ACDW34_RS01815 (ACDW34_01815) pilR 395505..396914 (-) 1410 WP_372403896.1 sigma-54-dependent transcriptional regulator Regulator
  ACDW34_RS01820 (ACDW34_01820) pilS 396932..398506 (-) 1575 WP_372405038.1 PAS domain-containing sensor histidine kinase Regulator
  ACDW34_RS01825 (ACDW34_01825) - 398529..399164 (-) 636 WP_130074492.1 response regulator -
  ACDW34_RS01830 (ACDW34_01830) - 399396..400460 (+) 1065 WP_130074493.1 D-alanyl-D-alanine endopeptidase -
  ACDW34_RS01835 (ACDW34_01835) thrC 400578..401717 (-) 1140 WP_107008527.1 threonine synthase -
  ACDW34_RS01840 (ACDW34_01840) - 401854..403158 (-) 1305 WP_107008526.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 524 a.a.        Molecular weight: 59921.78 Da        Isoelectric Point: 6.4976

>NTDB_id=1040154 ACDW34_RS01820 WP_372405038.1 396932..398506(-) (pilS) [Acinetobacter piscicola strain p38]
MWPAVSNSLQQTIYRLGTLYSVYRFTLSFCLIIIFLFTSEHNGINYLHSKLYFDSLIIFGFLSFLQLLSLKFFTRYISEQ
LFAIFLVDIIFLSTLTFSLGGPSLSISLLFVIMVFSANFLLKKNEALIVTLVSVIAVIYQQFVGSLFDVSNLNNISNSAL
LAFLFFLVYGIGQVSIQRFRVLETINSLQSLELLKLQNINRYILEQIELGYLVLDENYRIVVCNPAACSLLGIAPLYAYA
NEQYSLVKFQKELFDLLQIKTLEEGQRFQFQSNQSHYTVDIRVQKLIVPYQALTLLTLEDSQKINQKVQQLKLASLGQLS
ASIAHEIRNPLAAIAQANELSLDADLEQRQMLNAMIERQSQRINQIIQQTLDMAKNKKTIMSDIQLNIFFKDLFINDLAD
VKNQIALSLPQNYMIQFDESQLRQVLINLVRNAIRHNAHDADFIQILVHAEAQHLYIDVIDFGEGIARQNLAQLFQPFFT
TEINGTGLGLYLSQSICEANQAKLIYIEQKQKGACFRIECPLKI

Nucleotide


Download         Length: 1575 bp        

>NTDB_id=1040154 ACDW34_RS01820 WP_372405038.1 396932..398506(-) (pilS) [Acinetobacter piscicola strain p38]
ATGTGGCCTGCGGTATCCAATTCACTTCAACAAACTATTTATCGGTTAGGCACATTATATTCAGTTTATAGATTTACTTT
ATCTTTTTGTTTAATCATTATTTTTTTGTTCACATCTGAACATAATGGAATCAACTACCTACATAGTAAATTGTATTTTG
ATAGCTTAATTATTTTTGGCTTTCTGAGTTTTCTACAATTACTCTCTCTGAAATTTTTTACTCGATATATATCTGAGCAG
CTTTTTGCAATTTTTCTCGTCGATATTATATTTTTAAGTACGCTGACTTTTTCTTTAGGTGGCCCTAGTCTTTCAATCAG
TTTGTTATTTGTCATCATGGTTTTTTCAGCCAATTTTTTATTGAAAAAAAATGAAGCACTGATTGTGACACTTGTTTCTG
TTATTGCTGTTATTTATCAACAGTTTGTTGGCTCATTATTTGATGTATCTAACCTGAATAATATTAGCAATAGTGCACTG
TTGGCTTTTCTATTCTTTCTCGTCTATGGTATTGGGCAAGTCTCGATTCAGCGCTTTAGAGTATTAGAAACTATTAACTC
ATTGCAGTCTTTAGAATTATTAAAACTGCAAAATATTAACCGTTATATTTTAGAACAAATTGAACTCGGCTATTTGGTTT
TAGACGAAAATTATCGCATTGTGGTTTGTAATCCTGCGGCATGTTCATTATTAGGCATCGCCCCATTATATGCTTATGCA
AATGAACAGTATTCATTGGTCAAGTTTCAAAAAGAGCTATTTGATCTACTACAGATCAAAACTTTGGAAGAAGGACAACG
TTTCCAATTTCAATCGAATCAAAGTCATTATACCGTGGATATTCGAGTGCAAAAACTCATTGTGCCATATCAAGCATTAA
CGCTGTTGACCTTAGAAGATTCACAAAAAATAAATCAAAAAGTGCAACAACTCAAATTGGCTTCTCTTGGACAACTCTCT
GCAAGTATTGCCCATGAAATTCGTAATCCCTTAGCCGCGATTGCCCAAGCCAATGAATTAAGTTTAGATGCAGATCTTGA
GCAACGCCAAATGCTGAATGCAATGATTGAACGACAAAGTCAACGTATTAACCAAATTATTCAACAAACCTTAGATATGG
CAAAAAATAAAAAAACCATAATGTCCGATATTCAACTTAACATTTTTTTTAAAGATTTATTCATCAATGACTTAGCAGAT
GTAAAAAATCAAATTGCGTTAAGCCTGCCGCAAAATTATATGATTCAGTTTGATGAATCACAGTTAAGACAAGTTTTGAT
TAACCTCGTTCGTAATGCGATACGACATAATGCCCATGATGCTGATTTTATCCAAATTCTAGTACATGCTGAGGCTCAAC
ATCTGTATATTGATGTGATAGACTTCGGTGAAGGGATTGCAAGACAGAATCTTGCACAATTGTTTCAACCCTTTTTTACG
ACTGAAATCAATGGCACAGGACTTGGCTTATACTTATCGCAGAGTATTTGTGAAGCAAACCAAGCCAAGTTGATATATAT
AGAGCAAAAACAAAAAGGGGCATGTTTTCGAATAGAGTGCCCATTGAAAATTTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(315-376)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

56.731

99.237

0.563

Multiple sequence alignment