Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACDW34_RS01815 Genome accession   NZ_CP167896
Coordinates   395505..396914 (-) Length   469 a.a.
NCBI ID   WP_372403896.1    Uniprot ID   -
Organism   Acinetobacter piscicola strain p38     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 390505..401914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDW34_RS01800 (ACDW34_01800) lptG 391376..392446 (+) 1071 WP_174493449.1 LPS export ABC transporter permease LptG -
  ACDW34_RS01805 (ACDW34_01805) gpmI 392571..394118 (+) 1548 WP_286434639.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ACDW34_RS01810 (ACDW34_01810) - 394137..395312 (+) 1176 WP_130074490.1 S41 family peptidase -
  ACDW34_RS01815 (ACDW34_01815) pilR 395505..396914 (-) 1410 WP_372403896.1 sigma-54-dependent transcriptional regulator Regulator
  ACDW34_RS01820 (ACDW34_01820) pilS 396932..398506 (-) 1575 WP_372405038.1 PAS domain-containing sensor histidine kinase Regulator
  ACDW34_RS01825 (ACDW34_01825) - 398529..399164 (-) 636 WP_130074492.1 response regulator -
  ACDW34_RS01830 (ACDW34_01830) - 399396..400460 (+) 1065 WP_130074493.1 D-alanyl-D-alanine endopeptidase -
  ACDW34_RS01835 (ACDW34_01835) thrC 400578..401717 (-) 1140 WP_107008527.1 threonine synthase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 53229.98 Da        Isoelectric Point: 6.6689

>NTDB_id=1040153 ACDW34_RS01815 WP_372403896.1 395505..396914(-) (pilR) [Acinetobacter piscicola strain p38]
MTTRQPLVLLVDDEHDLCVLMQMTLARMGIKTHIAHHLQQAKLFFSEHNYNACITDLNLPDGSGLELVKHVTQHYPKVPI
AVLTAYGNMEIAIASLKAGAFDFVNKPINQQHLHQLLTKALHVPLIDYSEENLQLEHQLLIGESKPMLKLKETLKKVARS
QAPVFISGESGTGKEVVANLIHKLSNRSDSPFVVINCGAISEELIDRELFGYVSHSFTGATQDKQGLIQSANGGCLFLDE
IAELSLNTQTKLLRALQEKKIRPLGSEQEIDVDFRIISATNQNLEERVQQGKFRQDLFFRIHVMDLHLAPLRERGKDILI
LAEHFIHNICLEWDIANKELSEEGKRFLQSQPFLGNVRELRNMIERAITLSDGHLICIEHLQYSQKRNFNVEKSDTGISY
ENSTNSQEASGKIPTEGLEQYLEKVEKEVLLNALNQTHWNRTLAAKKLGMTFRSLRYRLKKFGLDSDDD

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=1040153 ACDW34_RS01815 WP_372403896.1 395505..396914(-) (pilR) [Acinetobacter piscicola strain p38]
ATGACCACACGACAACCATTAGTTCTACTTGTGGATGATGAGCACGATTTATGTGTACTCATGCAAATGACATTAGCGCG
CATGGGCATCAAAACCCATATTGCACATCATCTACAACAAGCCAAGTTGTTCTTTAGTGAGCACAACTACAATGCCTGTA
TTACCGATTTAAACCTACCTGATGGGAGTGGTTTAGAGTTGGTTAAGCACGTGACACAGCATTATCCAAAAGTACCTATT
GCGGTACTCACAGCCTATGGCAATATGGAAATTGCAATCGCCTCACTCAAAGCAGGTGCATTTGATTTCGTGAATAAACC
GATTAATCAACAGCATTTACACCAACTGCTCACCAAAGCCTTGCACGTGCCTTTAATCGATTATAGTGAGGAAAATTTGC
AACTAGAGCATCAACTTCTCATTGGCGAATCTAAGCCCATGTTAAAGTTGAAGGAAACCCTTAAAAAAGTCGCTCGCTCA
CAAGCCCCTGTTTTTATTTCAGGTGAATCAGGTACAGGCAAAGAAGTCGTTGCAAATTTGATTCATAAACTGAGTAATCG
CAGTGATAGCCCATTTGTGGTCATTAACTGTGGTGCTATTTCTGAAGAACTCATCGACCGAGAACTTTTCGGCTACGTCA
GTCATAGTTTTACAGGAGCGACCCAAGATAAACAGGGGTTAATTCAATCGGCTAATGGGGGGTGTCTATTTTTAGATGAA
ATTGCGGAACTATCCTTAAATACACAGACCAAACTATTACGCGCCTTACAAGAAAAGAAAATTCGTCCACTAGGCAGCGA
ACAAGAAATCGATGTAGATTTTCGCATCATCAGCGCAACCAATCAAAATCTTGAAGAACGCGTGCAACAAGGTAAATTTA
GACAAGATCTATTTTTCCGTATCCATGTCATGGACTTACACTTAGCTCCCCTGCGTGAAAGGGGCAAAGATATTCTCATT
TTAGCAGAACATTTTATACACAATATCTGTTTGGAATGGGATATTGCCAATAAAGAACTGTCTGAAGAGGGCAAACGCTT
TTTACAGTCGCAACCCTTTTTAGGCAATGTTCGTGAACTACGCAATATGATTGAACGTGCAATTACCTTAAGTGATGGGC
ACCTGATCTGTATTGAGCATTTGCAATATTCACAGAAACGTAATTTTAATGTGGAAAAATCAGATACGGGCATCAGTTAT
GAAAACTCAACAAATTCACAAGAAGCGTCTGGGAAGATCCCCACTGAAGGTTTAGAACAATACTTAGAAAAAGTGGAAAA
AGAAGTGTTATTAAATGCTTTAAATCAAACCCATTGGAACAGAACCTTAGCCGCCAAAAAACTCGGTATGACATTCCGCT
CTTTGCGCTATCGCTTGAAAAAGTTTGGCTTAGACAGTGATGATGATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

66.17

100

0.663
  pilR Pseudomonas aeruginosa PAK

45.415

97.655

0.443

Multiple sequence alignment