Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AB8613_RS13750 Genome accession   NZ_CP167894
Coordinates   2978899..2980287 (+) Length   462 a.a.
NCBI ID   WP_146492243.1    Uniprot ID   -
Organism   Vibrio sp. BS-M-Sm-2     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2973899..2985287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8613_RS13735 (AB8613_13735) - 2975189..2975629 (+) 441 WP_146492245.1 hypothetical protein -
  AB8613_RS13745 (AB8613_13745) uvrB 2976566..2978596 (+) 2031 WP_372383968.1 excinuclease ABC subunit UvrB -
  AB8613_RS13750 (AB8613_13750) luxO 2978899..2980287 (+) 1389 WP_146492243.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  AB8613_RS13755 (AB8613_13755) luxU 2980312..2980656 (+) 345 WP_372383969.1 quorum-sensing phosphorelay protein LuxU -
  AB8613_RS13760 (AB8613_13760) - 2980746..2981633 (-) 888 WP_146492241.1 YvcK family protein -
  AB8613_RS13765 (AB8613_13765) moaA 2981969..2982958 (+) 990 WP_102339796.1 GTP 3',8-cyclase MoaA -
  AB8613_RS13770 (AB8613_13770) moaB 2983049..2983561 (+) 513 WP_004734027.1 molybdenum cofactor biosynthesis protein B -
  AB8613_RS13775 (AB8613_13775) moaC 2983574..2984053 (+) 480 WP_017093480.1 cyclic pyranopterin monophosphate synthase MoaC -
  AB8613_RS13780 (AB8613_13780) moaD 2984050..2984295 (+) 246 WP_017632501.1 molybdopterin synthase sulfur carrier subunit -
  AB8613_RS13785 (AB8613_13785) moaE 2984298..2984753 (+) 456 WP_372383970.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51735.28 Da        Isoelectric Point: 6.4047

>NTDB_id=1040136 AB8613_RS13750 WP_146492243.1 2978899..2980287(+) (luxO) [Vibrio sp. BS-M-Sm-2]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLSMLPPPLNQPIENSL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=1040136 AB8613_RS13750 WP_146492243.1 2978899..2980287(+) (luxO) [Vibrio sp. BS-M-Sm-2]
ATGCAATCAAAAACGCTAGATAACAAATCGAAGTATTTGTTGATGGTAGAGGATACCGCTTCGGTAGCAGCTTTATATCG
CTCGTATCTTACACCGCTCGAAATTGATATCAACATTGTCGGCACTGGCCGCGATGCAATCGAGAGTTTGAATCATCGAA
TCCCAGACCTTATTTTATTAGATCTACGTCTGCCTGATATGACGGGTATGGACGTGCTATTTGCTGTAAAACAAAAGTAT
CCTGAAGTTCCGGTTATCTTCATGACGGCTCATGGCTCTATCGATACTGCGGTAGAAGCGATGCGTCATGGTTCTCAAGA
TTTCCTTATCAAACCGTGTGAAGCAGACCGACTCCGTATTACGGTGAACAATGCGATCCGCAAAGCTACCAAGCTTAAAA
ACAGCTCGGAACACCCGGGAAACCAAAATTACCAAGGCTTCATCGGCAGCAGCCAGACCATGCAGCAGGTTTATCGAACT
ATCGATTCTGCTGCATCAAGTAAGGCGAGTATTTTCATTACGGGTGAAAGTGGTACGGGTAAAGAGGTATGTGCAGAAGC
TATTCACGCTGCGAGTAAGCGTGGAGATAAGCCGTTTATCGCGATTAACTGTGCCGCTATCCCTAAAGATCTGATTGAAA
GTGAGCTGTTTGGCCATGTGAAAGGTGCCTTTACGGGCGCGGCAACTGATCGCCAAGGGGCTGCTGAGCTTGCTGATGGC
GGAACACTGTTTCTCGATGAACTGTGTGAAATGGACCTTGAACTGCAAACTAAGCTGCTGCGTTTTATCCAAACTGGTAC
TTTCCAAAAAGTAGGCTCTTCGAAGATGAAGAGTGTGGACGTTCGTTTTGTTTGTGCGACCAACCGTGACCCTTGGAAAG
AAGTACAAGAAGGTCGCTTTAGAGAAGATTTATATTATCGTTTATACGTGATTCCACTGCACTTGCCACCATTGCGCGAG
CGTGGTGAAGATGTTATCGAGATTGCTTACTCGTTACTAGGCTATATGTCGGTCGAGGAGGGGAAGGCGTTTGTTCGTTT
TGCTCAGGAAGTTCTTGATCGCTTTAATCAATATGAGTGGCCTGGGAATGTGCGTCAACTACAAAACGTATTACGGAACG
TGGTGGTATTGAATAATGGCAAAGAGATTACTCTTAGCATGCTCCCGCCACCATTGAACCAGCCGATTGAAAACAGTCTG
CGCTTGAAAGAGAAGCAGAACGAAGACATCACGGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAGACGGCTATCGA
ACAGGCCATTAAAGCGTGTGACGGTAACATTCCACGAGCAGCAGGTTTCCTAGATGTGAGTCCTTCGACCATATACCGCA
AGTTACAAACGTGGAATGCGAAGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

96.97

0.838
  pilR Pseudomonas aeruginosa PAK

38.085

97.186

0.37

Multiple sequence alignment