Detailed information
Bioinformatically predicted
Overview
| Name | opaR | Type | Regulator |
| Locus tag | AB8613_RS11500 | Genome accession | NZ_CP167894 |
| Coordinates | 2478289..2478894 (-) | Length | 201 a.a. |
| NCBI ID | WP_019824386.1 | Uniprot ID | A0A1E5FTC6 |
| Organism | Vibrio sp. BS-M-Sm-2 | ||
| Function | regulation of Dns (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2473289..2483894
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB8613_RS11490 (AB8613_11490) | aceF | 2474531..2476424 (+) | 1894 | Protein_2143 | pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase | - |
| AB8613_RS11495 (AB8613_11495) | lpdA | 2476666..2478096 (+) | 1431 | WP_017630530.1 | dihydrolipoyl dehydrogenase | - |
| AB8613_RS11500 (AB8613_11500) | opaR | 2478289..2478894 (-) | 606 | WP_019824386.1 | LuxR/HapR/OpaR family quorum-sensing transcriptional regulator | Regulator |
| AB8613_RS11505 (AB8613_11505) | hpt | 2479232..2479762 (+) | 531 | WP_017633235.1 | hypoxanthine phosphoribosyltransferase | - |
| AB8613_RS11510 (AB8613_11510) | can | 2479836..2480504 (-) | 669 | WP_019824387.1 | carbonate dehydratase | - |
| AB8613_RS11515 (AB8613_11515) | - | 2480791..2482422 (+) | 1632 | WP_327784267.1 | SulP family inorganic anion transporter | - |
| AB8613_RS11520 (AB8613_11520) | - | 2482737..2483654 (+) | 918 | WP_146490628.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 201 a.a. Molecular weight: 23208.45 Da Isoelectric Point: 6.2915
>NTDB_id=1040134 AB8613_RS11500 WP_019824386.1 2478289..2478894(-) (opaR) [Vibrio sp. BS-M-Sm-2]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKQNLHNIATEMVTLVAQDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVETPEELSSLTDSYLNMLCIYK
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKQNLHNIATEMVTLVAQDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVETPEELSSLTDSYLNMLCIYK
Nucleotide
Download Length: 606 bp
>NTDB_id=1040134 AB8613_RS11500 WP_019824386.1 2478289..2478894(-) (opaR) [Vibrio sp. BS-M-Sm-2]
ATGGACTCAATATCTAAGAGACCTAGAACTAGGCTTTCACCTTTAAAAAGAAAACTTCAATTGATGGAAATCGCTCTTGA
GGTATTCTCTCGCCGCGGTATCGGTCGTGGTGGACACGCTGATATTGCAGACATCGCTCAGGTGTCTGTAGCAACCGTAT
TTAACTACTTCCCTACCCGTGAAGATCTGGTTGATGAAGTGCTAAATCACGTTGTACGCCAATTCTCTAACTTCCTTTCA
GACAATATCGATCTGGATATTCACGCAAAACAAAACCTACATAATATTGCGACTGAAATGGTGACGTTAGTGGCTCAAGA
TAGCCATTGGTTGAACGTATGGTTTGAATGGAGCGCTTCGACTCGTGATGAAGTGTGGCCTCTATTCGTAACCACAAACC
GCACTAACCAAATGTTAGTACAAAACATGTTTAGCAAAGCGATTGAACGCGGCGAAGTTTGCGACGATCACGACCCTAAA
CATCTTGCAAACCTATTCCACGGCATCTGCTACTCGCTGTTCATTCAAGCGAAACGTGTGGAAACGCCAGAAGAGCTTTC
AAGCTTAACCGATAGCTACCTAAACATGCTGTGCATCTATAAGTAG
ATGGACTCAATATCTAAGAGACCTAGAACTAGGCTTTCACCTTTAAAAAGAAAACTTCAATTGATGGAAATCGCTCTTGA
GGTATTCTCTCGCCGCGGTATCGGTCGTGGTGGACACGCTGATATTGCAGACATCGCTCAGGTGTCTGTAGCAACCGTAT
TTAACTACTTCCCTACCCGTGAAGATCTGGTTGATGAAGTGCTAAATCACGTTGTACGCCAATTCTCTAACTTCCTTTCA
GACAATATCGATCTGGATATTCACGCAAAACAAAACCTACATAATATTGCGACTGAAATGGTGACGTTAGTGGCTCAAGA
TAGCCATTGGTTGAACGTATGGTTTGAATGGAGCGCTTCGACTCGTGATGAAGTGTGGCCTCTATTCGTAACCACAAACC
GCACTAACCAAATGTTAGTACAAAACATGTTTAGCAAAGCGATTGAACGCGGCGAAGTTTGCGACGATCACGACCCTAAA
CATCTTGCAAACCTATTCCACGGCATCTGCTACTCGCTGTTCATTCAAGCGAAACGTGTGGAAACGCCAGAAGAGCTTTC
AAGCTTAACCGATAGCTACCTAAACATGCTGTGCATCTATAAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| opaR | Vibrio parahaemolyticus RIMD 2210633 |
82.5 |
99.502 |
0.821 |
| hapR | Vibrio cholerae C6706 |
73.367 |
99.005 |
0.726 |
| hapR | Vibrio cholerae strain A1552 |
73.367 |
99.005 |
0.726 |