Detailed information NTG1040127

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AB8613_RS11265
• Genome accession: NZ_CP167894
• Coordinates: 2432189..2433169 (+)
• Length: 326 a.a.
• NCBI ID: WP_017059027.1
• Uniprot ID: A0A1E5FN76
• Organism: Vibrio sp. BS-M-Sm-2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2427189..2438169

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB8613_RS11235 (AB8613_11235)	ispD	2427437..2428138 (+)	702	WP_146490605.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AB8613_RS11240 (AB8613_11240)	ispF	2428141..2428620 (+)	480	WP_086711987.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AB8613_RS11245 (AB8613_11245)	truD	2428643..2429689 (+)	1047	WP_372383828.1	tRNA pseudouridine(13) synthase TruD	-
AB8613_RS11250 (AB8613_11250)	surE	2429771..2430514 (+)	744	WP_086711985.1	5'/3'-nucleotidase SurE	-
AB8613_RS11255 (AB8613_11255)	-	2430515..2431141 (+)	627	WP_372383829.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AB8613_RS11260 (AB8613_11260)	nlpD	2431176..2432090 (+)	915	WP_050620526.1	murein hydrolase activator NlpD	-
AB8613_RS11265 (AB8613_11265)	rpoS	2432189..2433169 (+)	981	WP_017059027.1	RNA polymerase sigma factor RpoS	Regulator
AB8613_RS11270 (AB8613_11270)	mutS	2433310..2435871 (-)	2562	WP_372383830.1	DNA mismatch repair protein MutS	-
AB8613_RS11275 (AB8613_11275)	pncC	2435996..2436490 (+)	495	WP_372384819.1	nicotinamide-nucleotide amidase	-
AB8613_RS11280 (AB8613_11280)	recA	2436630..2437670 (+)	1041	WP_017056586.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37218.43 Da
• Isoelectric Point: 5.1506

>NTDB_id=1040127 AB8613_RS11265 WP_017059027.1 2432189..2433169(+) (rpoS) [Vibrio sp. BS-M-Sm-2]
MSISNAVTKEEFDLDQATTEPEALGKAKRTVTKKTEAKEEVEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=1040127 AB8613_RS11265 WP_017059027.1 2432189..2433169(+) (rpoS) [Vibrio sp. BS-M-Sm-2]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTGACCAAGCAACCACGGAACCGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCACGAAGAAAACCGAAGCGAAAGAAGAAGTTGAAGTTACGTCTAAAAGCTTAGATGCCACTCAACTGT
ATTTAGGCGAAATCGGTTTCTCACCACTACTAACCGCAGAAGAAGAAGTGCTTTACGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCACGTAAACGCATGATCGAAAGTAACCTGCGTTTGGTGGTAAAAATTTCTCGTCGTTATAGCAACCGTGGCTT
GGCACTTCTCGATCTAATCGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGTGGCTTCC
GCTTCTCAACTTACGCAACATGGTGGATTCGTCAAACCATTGAACGGGCGTTGATGAATCAGACTCGCACTATCCGTTTG
CCAATTCATGTTGTGAAAGAGCTGAACATCTACCTACGTACTGCAAGAGAGCTATCACAAAAGCTTGACCATGAACCAAC
GGCAGAAGAAATTGCTTCTAAGCTAGATAAGCCAGTTGGTGATGTGAGTAAGATGCTTCGTCTAAACGAACGAGTGAGCT
CTGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCAGACATCAACAATTCAGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCACTGATATTCTGGCTTGATGAACTAAACCCGAAGCAGAAAGAAGTGCT
TGCACGTCGATTTGGACTACTAGGTTATGAACCGTCAACGCTAGAAGAAGTTGGCCGTGAAATCAGCCTAACTCGTGAGC
GAGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGTGAGATTCTTATCAAGCAAGGTCTGAATATGGAAAACCTG
TTCAACGTAGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

3D structure

• AlphaFold DB: A0A1E5FN76

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.737	100	0.837