Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   ACDK45_RS03230 Genome accession   NZ_CP167879
Coordinates   627498..627785 (+) Length   95 a.a.
NCBI ID   WP_021034778.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NTHi52     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 622498..632785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDK45_RS03205 (ACDK45_03205) nrfE 622567..624473 (-) 1907 Protein_602 heme lyase NrfEFG subunit NrfE -
  ACDK45_RS03210 (ACDK45_03210) suhB 624582..625394 (-) 813 WP_011272298.1 inositol-1-monophosphatase -
  ACDK45_RS03215 (ACDK45_03215) comN 625594..626106 (+) 513 WP_011272299.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACDK45_RS03220 (ACDK45_03220) comO 626106..626825 (+) 720 WP_011272300.1 type II secretion system protein J Machinery gene
  ACDK45_RS03225 (ACDK45_03225) comP 626822..627505 (+) 684 WP_011272301.1 DUF2572 family protein Machinery gene
  ACDK45_RS03230 (ACDK45_03230) comQ 627498..627785 (+) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene
  ACDK45_RS03235 (ACDK45_03235) recC 627831..631196 (+) 3366 WP_044364474.1 exodeoxyribonuclease V subunit gamma -
  ACDK45_RS03240 (ACDK45_03240) nrdR 631251..631700 (+) 450 WP_005651549.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 11057.89 Da        Isoelectric Point: 9.2201

>NTDB_id=1040086 ACDK45_RS03230 WP_021034778.1 627498..627785(+) (comQ) [Haemophilus influenzae strain NTHi52]
MNKGMSLITLLFSLALFSVLFLVFNQWTAEQRKSAVKIYQDFQATQIAENQAQRQFLGLACEQLIQQNGLTFRIRCENER
IIVRYPTSEILIKTQ

Nucleotide


Download         Length: 288 bp        

>NTDB_id=1040086 ACDK45_RS03230 WP_021034778.1 627498..627785(+) (comQ) [Haemophilus influenzae strain NTHi52]
ATGAATAAAGGAATGTCTCTTATTACATTGTTATTTTCTTTAGCTTTATTTAGCGTTTTATTTCTTGTTTTTAATCAATG
GACGGCAGAACAGCGAAAAAGTGCGGTAAAAATTTATCAAGATTTTCAGGCAACACAAATTGCAGAGAATCAAGCTCAAC
GCCAATTTTTAGGGTTAGCTTGTGAACAATTGATACAACAAAATGGCTTAACTTTTCGTATTCGATGTGAAAATGAACGC
ATTATTGTGCGTTATCCTACGAGTGAAATTTTGATAAAAACTCAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

92.632

100

0.926

Multiple sequence alignment