Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACCQ00_RS15960 Genome accession   NZ_CP167841
Coordinates   3674337..3675791 (+) Length   484 a.a.
NCBI ID   WP_039568287.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 3761     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3669337..3680791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ00_RS15940 (ACCQ00_15945) - 3669514..3669741 (-) 228 Protein_3118 hypothetical protein -
  ACCQ00_RS15945 (ACCQ00_15950) sucD 3670152..3671027 (-) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  ACCQ00_RS15950 (ACCQ00_15955) sucC 3671052..3672221 (-) 1170 WP_039568282.1 ADP-forming succinate--CoA ligase subunit beta -
  ACCQ00_RS15955 (ACCQ00_15960) - 3672453..3674066 (+) 1614 WP_039568284.1 PAS domain-containing sensor histidine kinase -
  ACCQ00_RS15960 (ACCQ00_15965) pilR 3674337..3675791 (+) 1455 WP_039568287.1 sigma-54 dependent transcriptional regulator Regulator
  ACCQ00_RS15965 (ACCQ00_15970) - 3675988..3676134 (-) 147 WP_080948799.1 serine/threonine protein kinase -
  ACCQ00_RS15970 (ACCQ00_15975) - 3676196..3676315 (-) 120 WP_039568289.1 hypothetical protein -
  ACCQ00_RS15975 (ACCQ00_15980) pilB 3676560..3678269 (-) 1710 WP_180959844.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCQ00_RS15980 (ACCQ00_15985) - 3678361..3678816 (-) 456 WP_039568290.1 pilin -
  ACCQ00_RS15985 (ACCQ00_15990) pilA 3678926..3679366 (-) 441 WP_039568292.1 pilin Machinery gene

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52331.04 Da        Isoelectric Point: 6.6960

>NTDB_id=1039762 ACCQ00_RS15960 WP_039568287.1 3674337..3675791(+) (pilR) [Xanthomonas sp. NCPPB 3761]
MGGDPLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAAPPGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=1039762 ACCQ00_RS15960 WP_039568287.1 3674337..3675791(+) (pilR) [Xanthomonas sp. NCPPB 3761]
TTGGGCGGCGACCCGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCCTGCGCATCAGCACCG
CTGCCAACCTGGCCGAGGCGCGCGAGTTGCTGGCCAACAATCCCTACGATTTGTGCCTGACCGACATGCGGTTGCCAGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCGATGATCACCGCCTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCTCCGCCACCGCCGCCACCGGAACAGGCCAGCCGC
CTGCTTGGCGACTCCAGCGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGTACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTT
GCAAATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGATCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCGGCCATCAT
CGCGCGGCTGGCACACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCGGCGCTCGACGCATTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCTACC
GACCTGCGCCTGCCCGCGCACGGCGGCCACCGTTTGGCCGCCCCCCCAGGAGGCGCCGCGGCCGAACCGCGCGAAGCCGT
GGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAGCAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGCTGCGTTACAAGCTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(28-134)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.283

95.661

0.605
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment