Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   QUF32_RS21735 Genome accession   NZ_AP028129
Coordinates   1257539..1258720 (-) Length   393 a.a.
NCBI ID   WP_222740149.1    Uniprot ID   -
Organism   Vibrio fluvialis strain IDH05335     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1252539..1263720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF32_RS21730 (KKIDH5335_42170) cqsS 1255455..1257503 (+) 2049 WP_024375462.1 hybrid sensor histidine kinase/response regulator Regulator
  QUF32_RS21735 (KKIDH5335_42180) cqsA 1257539..1258720 (-) 1182 WP_222740149.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  QUF32_RS21740 (KKIDH5335_42190) - 1258939..1259895 (-) 957 WP_038157684.1 TDT family transporter -
  QUF32_RS21745 (KKIDH5335_42200) clcA 1260060..1261457 (-) 1398 WP_154182310.1 H(+)/Cl(-) exchange transporter ClcA -
  QUF32_RS21750 (KKIDH5335_42210) - 1261918..1262907 (+) 990 WP_222740153.1 GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43474.39 Da        Isoelectric Point: 6.8577

>NTDB_id=103968 QUF32_RS21735 WP_222740149.1 1257539..1258720(-) (cqsA) [Vibrio fluvialis strain IDH05335]
MKTDAKNNRLPKFIQDRLNFFVRDLIQSNNNGKHLVLGKRPSQGDIVLQSNDYLSLANHPLIRARLKKAIDDTHDSVFMS
AIFLQDDESKPSLEHQLAEFAHFDSCLLSQSGWNANTALLQTICAPGSNVYIDFFAHMSMWEGARYANATIHPFMHNNCD
HLLKQIKRHGPGIIVVDSIYSTIGTIAPLAELVAIAKETGSAILVDESHSLGTHGKNGAGLLAELGLSDQVDFMTASLAK
TFAYRAGVIWANNNVNQCVPFVGYPAIFSSTILPYEIAALEATLDVIKSADERRERLFHNTHILSTGLNSLGINIRSQSQ
IIALETGDERNTEKVRDYLEDNGIFGAVFCRPATSKTKNIIRLSLTSSVTAEQIDRILSVCQNAVNRSDLYFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=103968 QUF32_RS21735 WP_222740149.1 1257539..1258720(-) (cqsA) [Vibrio fluvialis strain IDH05335]
ATGAAAACTGATGCCAAAAATAATCGGTTACCTAAGTTTATTCAGGACCGTTTAAATTTCTTCGTTCGCGATTTAATTCA
AAGTAATAACAACGGTAAACATCTGGTATTAGGTAAACGCCCTTCACAAGGCGATATTGTTTTACAAAGCAACGATTACC
TCAGTCTGGCTAACCATCCGTTGATTCGTGCGCGTTTGAAGAAGGCCATCGACGATACTCATGACAGCGTCTTTATGTCG
GCGATTTTCCTGCAGGATGATGAGTCGAAACCAAGCCTGGAACATCAACTGGCAGAGTTCGCTCACTTTGATTCCTGCCT
GCTGTCGCAATCGGGCTGGAATGCCAATACCGCTTTGCTGCAAACCATCTGCGCGCCAGGAAGTAATGTCTATATCGACT
TCTTTGCTCATATGTCTATGTGGGAAGGCGCTCGTTACGCGAATGCCACTATTCATCCGTTTATGCACAACAACTGCGAC
CATTTACTTAAGCAGATAAAACGCCATGGCCCGGGAATTATCGTCGTCGATTCAATCTACAGCACCATTGGCACCATTGC
GCCGTTAGCTGAATTAGTCGCGATCGCTAAAGAGACCGGCAGCGCTATTCTCGTTGATGAATCGCACTCTCTTGGCACCC
ACGGTAAGAATGGCGCAGGTTTACTGGCAGAGTTAGGTTTATCTGATCAAGTGGATTTTATGACTGCGAGCCTGGCGAAA
ACGTTTGCTTATCGGGCGGGAGTTATCTGGGCAAATAATAACGTCAATCAGTGCGTTCCATTCGTGGGTTATCCGGCGAT
ATTCAGCTCAACAATTTTGCCTTATGAAATTGCAGCTCTCGAAGCAACGCTGGATGTGATTAAATCCGCCGATGAACGAC
GTGAGCGTTTATTTCATAATACACATATATTGTCTACGGGATTAAATAGCCTTGGTATTAATATTCGCAGTCAATCGCAA
ATAATAGCGTTAGAAACTGGAGATGAAAGAAATACAGAAAAAGTCCGCGATTATTTAGAAGATAACGGTATTTTTGGCGC
AGTATTTTGCCGACCAGCCACATCGAAAACTAAGAATATTATTCGCTTGTCATTAACCAGTTCTGTCACTGCTGAACAGA
TCGACCGTATTTTATCGGTCTGCCAAAATGCGGTAAACAGAAGCGACCTTTACTTTAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

70.13

97.964

0.687

Multiple sequence alignment