Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABRP17_RS04285 Genome accession   NZ_CP167826
Coordinates   990726..992105 (+) Length   459 a.a.
NCBI ID   WP_188324774.1    Uniprot ID   A0A7H1AJJ2
Organism   Stenotrophomonas sp. WHRI 8082     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 985726..997105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRP17_RS04270 (ABRP17_004270) sucD 986694..987569 (-) 876 WP_188324773.1 succinate--CoA ligase subunit alpha -
  ABRP17_RS04275 (ABRP17_004275) sucC 987591..988760 (-) 1170 WP_057506903.1 ADP-forming succinate--CoA ligase subunit beta -
  ABRP17_RS04280 (ABRP17_004280) - 989055..990665 (+) 1611 WP_188327344.1 PAS domain-containing sensor histidine kinase -
  ABRP17_RS04285 (ABRP17_004285) pilR 990726..992105 (+) 1380 WP_188324774.1 sigma-54 dependent transcriptional regulator Regulator
  ABRP17_RS04290 (ABRP17_004290) - 992158..992646 (-) 489 WP_349984903.1 BBE domain-containing protein -
  ABRP17_RS04295 (ABRP17_004295) - 992653..993786 (-) 1134 WP_349984904.1 FAD-binding protein -
  ABRP17_RS04300 (ABRP17_004300) - 994178..994642 (-) 465 WP_188324775.1 cupin domain-containing protein -
  ABRP17_RS04305 (ABRP17_004305) - 994781..995674 (+) 894 WP_349984905.1 LysR family transcriptional regulator -
  ABRP17_RS04310 (ABRP17_004310) - 995761..996744 (-) 984 WP_349984906.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49876.36 Da        Isoelectric Point: 6.7818

>NTDB_id=1039632 ABRP17_RS04285 WP_188324774.1 990726..992105(+) (pilR) [Stenotrophomonas sp. WHRI 8082]
MNETRSALVVDDERDIRELLVLTLGRMGLRINTAANLAEARELLASNPYDLCITDMRLPDGNGIELVTEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNAERPRAVTPGEQSSRLLGRSQPMETLRATLGKVARS
QAPVYILGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPSELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRPVGASAEIPVDVRILSATHKDLAHLVDEGRFRHDLYYRINVIELRVPPLRERHEDLTE
LAASILARLARNHGCAIPLLAPSALDALAHYSFPGNVRELENILERALALAESDSIGAADLRLPQAATRAPGAAAGPVVE
AVVDLPAGNAALPSYIEQMERTAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1039632 ABRP17_RS04285 WP_188324774.1 990726..992105(+) (pilR) [Stenotrophomonas sp. WHRI 8082]
ATGAACGAAACCCGTAGCGCACTTGTCGTCGATGACGAACGCGACATCCGTGAACTGCTGGTGTTGACGCTGGGCCGCAT
GGGCCTGCGCATCAACACCGCGGCCAACCTGGCAGAGGCCCGCGAGTTGCTGGCCAGCAATCCGTATGACCTGTGCATCA
CCGACATGCGCTTGCCCGACGGCAATGGGATCGAGCTGGTGACCGAGATCGCACAGCATTACCCGCGCACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTCGCCGTGGAAGCGCTGAAGGCCGGTGCTTTTGATTTCGTCAGCAAGCCTGT
CGACATTTCCGTGCTGCGCGGGCTGGTCAAGCATGCGCTGGAACTCAACAACGCCGAACGCCCACGCGCGGTGACCCCGG
GCGAGCAGAGCAGCCGCCTGCTCGGTCGTTCGCAGCCGATGGAGACCCTGCGCGCTACGCTGGGCAAAGTGGCCCGCAGC
CAGGCACCGGTGTACATCCTCGGTGAATCCGGCGTCGGCAAAGAGCTCGTCGCGCGCACCATCCACGAACAAGGCGCGCG
CGCCGCAGGACCGTTCATTCCGGTGAACTGCGGCGCCATTCCATCGGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGA
AAGGCAGTTTCACCGGCGCGCATGCCGACAAGCCGGGGCTGTTCCAGGCTGCGCACGGCGGCACGCTGTTCCTCGACGAA
GTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCCCTGTCGGCGCATC
GGCGGAAATCCCGGTCGACGTGCGCATCCTGTCGGCCACGCATAAAGACCTGGCCCACCTGGTGGATGAAGGCCGCTTCC
GCCACGATCTGTATTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCCACGAAGACCTGACCGAG
CTGGCTGCCTCGATCCTGGCTCGGCTGGCGCGTAATCACGGCTGCGCCATTCCCCTGCTTGCGCCGTCTGCTCTGGACGC
CTTGGCGCATTACAGCTTTCCCGGCAATGTGCGTGAGCTGGAAAACATCCTGGAACGCGCGTTGGCACTCGCCGAGAGCG
ACAGCATCGGTGCCGCTGACCTGCGCCTGCCCCAGGCGGCCACGCGCGCGCCCGGTGCCGCTGCCGGGCCGGTGGTGGAG
GCGGTGGTCGACCTGCCGGCCGGCAACGCGGCCCTGCCCTCCTACATCGAACAGATGGAACGCACCGCCATCCAGCGCGC
ACTGGAGGAGAACCGCTGGAACAAGACGCGCACCGCCGCCCAGCTGGGCATCACCTTCCGTGCGTTGCGTTACAAGCTGA
AAAAGCTCGGCATGGAATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(416-456)

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(141-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H1AJJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.158

99.346

0.627
  pilR Acinetobacter baumannii strain A118

49.13

100

0.492

Multiple sequence alignment