Detailed information NTG1039603

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABQZ63_RS15395
• Genome accession: NZ_CP167822
• Coordinates: 3571569..3572963 (+)
• Length: 464 a.a.
• NCBI ID: WP_008575092.1
• Uniprot ID: -
• Organism: Xanthomonas perforans strain WHRI 8957
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3566569..3577963

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABQZ63_RS15375 (ABQZ63_015375)	-	3566812..3567156 (-)	345	WP_008577787.1	ribbon-helix-helix domain-containing protein	-
ABQZ63_RS15380 (ABQZ63_015380)	sucD	3567327..3568202 (-)	876	WP_029820064.1	succinate--CoA ligase subunit alpha	-
ABQZ63_RS15385 (ABQZ63_015385)	sucC	3568227..3569396 (-)	1170	WP_007965356.1	ADP-forming succinate--CoA ligase subunit beta	-
ABQZ63_RS15390 (ABQZ63_015390)	-	3569628..3571241 (+)	1614	WP_033478933.1	PAS domain-containing sensor histidine kinase	-
ABQZ63_RS15395 (ABQZ63_015395)	pilR	3571569..3572963 (+)	1395	WP_008575092.1	sigma-54 dependent transcriptional regulator	Regulator
ABQZ63_RS15400 (ABQZ63_015400)	pilB	3574268..3576004 (-)	1737	WP_008575094.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABQZ63_RS15405 (ABQZ63_015405)	-	3576261..3577118 (+)	858	WP_074053368.1	glycosyltransferase family 2 protein	-

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 50239.61 Da
• Isoelectric Point: 6.5716

>NTDB_id=1039603 ABQZ63_RS15395 WP_008575092.1 3571569..3572963(+) (pilR) [Xanthomonas perforans strain WHRI 8957]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAPGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLSDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAVPNGGAA
AEQREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGMD

Nucleotide

• Length: 1395 bp

>NTDB_id=1039603 ABQZ63_RS15395 WP_008575092.1 3571569..3572963(+) (pilR) [Xanthomonas perforans strain WHRI 8957]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCTTGCGCATCAGCACCGCGGCGAACCTGGCCGAGGCGCGCGAGTTGCTGGCCAACAACCCCTACGATCTGTGCCTGA
CCGACATGCGGTTGCCGGACGGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTACCCGCAGACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
CGACATCGGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAATCGCGACCGTCCCGCTCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGGGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCACGAACAAGGCGC
ACGCGCCCCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGC
ATCCAGCGAATCGCTGGTGGATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGAGCGACCTGGTCTCCGACGGCCGCT
TTCGGCATGACCTGTACTACCGCATCAACGTAATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGATCTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCATGGCCGCCCCATTCCGCTGCTGACCCAGTCGGCGCTCGA
CGCATTGAATCACTACGGCTTCCCAGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCTCACGGCGGCCACCGTCTGGCCGTCCCCAACGGAGGCGCCGCG
GCCGAACAGCGCGAAGCCGTCGTGGACATCGACCCGGCCTCAGCCGCGCTGCCGTCCTACATCGAGCAACTGGAGCGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACTGCGGCGCAGCTGGGCATCACGTTTCGCGCGC
TGCGTTATAAGTTGAAGAAGCTGGGGATGGACTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Bacterial regulatory protein, Fis family (HTH_8) (421-461)

• Response regulator receiver domain (Response_reg) (8-114)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.283	99.784	0.631
pilR	Acinetobacter baumannii strain A118	49.353	100	0.494