Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   QUF32_RS06785 Genome accession   NZ_AP028128
Coordinates   1448897..1450321 (-) Length   474 a.a.
NCBI ID   WP_286236157.1    Uniprot ID   -
Organism   Vibrio fluvialis strain IDH05335     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1443897..1455321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF32_RS06765 (KKIDH5335_12770) - 1443967..1446675 (+) 2709 WP_222772521.1 EAL domain-containing protein -
  QUF32_RS06770 (KKIDH5335_12780) cdd 1446722..1447609 (-) 888 WP_020327590.1 cytidine deaminase -
  QUF32_RS06775 (KKIDH5335_12790) - 1447811..1448491 (-) 681 WP_075988636.1 LrgB family protein -
  QUF32_RS06780 (KKIDH5335_12800) - 1448482..1448856 (-) 375 WP_020327588.1 CidA/LrgA family protein -
  QUF32_RS06785 (KKIDH5335_12810) sbcB 1448897..1450321 (-) 1425 WP_286236157.1 exodeoxyribonuclease I Machinery gene
  QUF32_RS06790 (KKIDH5335_12820) - 1450559..1450771 (+) 213 WP_286236158.1 hypothetical protein -
  QUF32_RS06795 (KKIDH5335_12830) - 1450853..1452232 (-) 1380 WP_020432565.1 L-cystine transporter -
  QUF32_RS06800 (KKIDH5335_12840) - 1452433..1453116 (-) 684 WP_286236159.1 NAD(P)H-binding protein -
  QUF32_RS06805 (KKIDH5335_12850) - 1453501..1454112 (+) 612 WP_047458856.1 flavin reductase family protein -
  QUF32_RS06810 (KKIDH5335_12860) cobT 1454126..1455154 (+) 1029 WP_202660419.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54492.93 Da        Isoelectric Point: 5.2471

>NTDB_id=103945 QUF32_RS06785 WP_286236157.1 1448897..1450321(-) (sbcB) [Vibrio fluvialis strain IDH05335]
MQQQHQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVLYCQLPADYLPAPEAALITGIIPQKAMAQGLSEP
EFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGIVWPENDEGFT
SFKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVADLAKDPQPLIDLDVDALHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAA
TIGIDRELCLANLARIRQHPEIREKLAALFGIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTKPERLGELDITFSDK
RIEPLLFRYRARNFPWTLDENDQRRWANHCRDYYETRLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=103945 QUF32_RS06785 WP_286236157.1 1448897..1450321(-) (sbcB) [Vibrio fluvialis strain IDH05335]
ATGCAGCAGCAACACCAGCCAACTTATTTCTTCTTTGACTACGAGACGTGGGGCACCAGCCCGGCCAAAGATCGTCCGAG
TCAGTTTGCTGGTGTGCGCACAGACATGGATTTCAACATCATTGGCGAGCCTTTGGTGCTCTATTGCCAACTGCCAGCGG
ATTATCTGCCAGCGCCAGAAGCCGCGCTGATTACCGGCATCATTCCACAAAAAGCGATGGCACAAGGGCTTTCAGAGCCG
GAGTTTATTGCCAAAATTCACGCAGAACTGTCGACACCCAACACCACCAGCCTGGGTTACAACAGCATTCGTTTCGACGA
TGAAGTGACACGTTATACCTGCTACCGCAACTTTCTCGACCCGTATGCCTGGAGCTGGCAAAACGGCAACTCACGTTGGG
ATCTGCTCGATGTGATGCGTGCGTGTCATGCGCTGCGCCCGGAAGGCATTGTGTGGCCGGAAAACGACGAAGGCTTTACC
AGCTTCAAACTTGAGCATTTGTCCAAAGCCAACGGCATTGAACACGAAAATGCGCACGATGCGATGGCCGATGTGATTGC
GACGATTGAACTGGCGAAAAAAGTCAAAGCGGCGCAGCCCAAACTGTTCGATTATTTCTTCTCTATGCGCCATAAGCGCA
AACTGAATGAACTGATTGATATCGTCAACATGACGCCGCTGATGCACGTGTCCGGCATGCTGGGTCGCGAGTGTCAATAC
ACCAGTTGGATTGTGCCGATAGCCTGGCACCCTACCAATCAGAACGCCGTGATTGTGGCTGATTTGGCCAAAGATCCACA
GCCGCTGATCGACTTAGATGTGGACGCTCTGCATGCACGTCTATATACCCGTCACGATGATTTAGCACCGGATGAACTGC
CTGTGCCCGTCAAACTGGTTCATCTCAATAAATGCCCGATTCTGGCACCGGCGAAAACGCTGACCGCAGAAAATGCCGCT
ACCATCGGTATTGATCGCGAATTGTGTCTAGCGAATCTGGCTCGCATTCGTCAGCATCCGGAAATTCGAGAGAAGCTGGC
AGCCCTCTTTGGCATTGAACGAGAATTTGAAGCATCGAACGATGTTGATACACAGCTCTATGACGGATTCTTCTCACCTG
CGGATAAAGCGGCGATGGAGATCATCCGTTCAACCAAACCTGAGCGGCTTGGCGAACTGGATATTACCTTCAGCGATAAA
CGCATCGAACCGCTGCTGTTTCGCTATCGCGCACGTAACTTCCCTTGGACGCTGGATGAAAATGACCAGCGCCGCTGGGC
GAACCATTGCCGCGACTACTACGAAACACGCCTGCCAGATTACATGCTGAATCTGGAAAACTTAGTTCATGAACATGAAA
GTGACGAAAAGAAAATCGCCATTTTAAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCTTAG

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-191)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

83.298

99.789

0.831

Multiple sequence alignment