Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACCO40_RS12260 Genome accession   NZ_CP167793
Coordinates   2417786..2419516 (-) Length   576 a.a.
NCBI ID   WP_372401633.1    Uniprot ID   -
Organism   Bacillus spizizenii strain SHT-15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2412786..2424516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCO40_RS12235 (ACCO40_12235) - 2413383..2413517 (+) 135 WP_003236876.1 hypothetical protein -
  ACCO40_RS12240 (ACCO40_12240) - 2413590..2414708 (+) 1119 WP_072566533.1 NADH-dependent flavin oxidoreductase -
  ACCO40_RS12245 (ACCO40_12245) - 2414925..2415104 (-) 180 WP_268456013.1 hypothetical protein -
  ACCO40_RS12250 (ACCO40_12250) spo0A 2415251..2416054 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ACCO40_RS12255 (ACCO40_12255) spoIVB 2416332..2417612 (-) 1281 WP_014114356.1 SpoIVB peptidase -
  ACCO40_RS12260 (ACCO40_12260) recN 2417786..2419516 (-) 1731 WP_372401633.1 DNA repair protein RecN Machinery gene
  ACCO40_RS12265 (ACCO40_12265) argR 2419552..2420001 (-) 450 WP_014114358.1 arginine repressor ArgR -
  ACCO40_RS12270 (ACCO40_12270) - 2420098..2420943 (-) 846 WP_372401635.1 TlyA family RNA methyltransferase -
  ACCO40_RS12275 (ACCO40_12275) dxs 2420940..2422841 (-) 1902 WP_061186892.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ACCO40_RS12280 (ACCO40_12280) - 2423022..2423912 (-) 891 WP_372401637.1 polyprenyl synthetase family protein -
  ACCO40_RS12285 (ACCO40_12285) - 2423902..2424156 (-) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64707.56 Da        Isoelectric Point: 4.7405

>NTDB_id=1039419 ACCO40_RS12260 WP_372401633.1 2417786..2419516(-) (recN) [Bacillus spizizenii strain SHT-15]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFLLESGHPVFDVC
IEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALQ
AYQEGYHRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNYIETRLNEIKQLKRKYGATV
EEILEYASKIEEEIDQIENRDSHLQSVKKELDSVGKDVAVEAANVSQIRKVWAKKLADEIHRELKSLYMEKSTFDTEFKI
RTASRNEEAPIVNGQPVQLTDQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKVVEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=1039419 ACCO40_RS12260 WP_372401633.1 2417786..2419516(-) (recN) [Bacillus spizizenii strain SHT-15]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGAGGGCTCACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGACGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTCAGATATGGAGAGACAAAAGCCGAGCTTGAAGGGCTGTTTCTATTGGAGAGCGGCCACCCCGTTTTTGACGTATGC
ATTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTCATGAGAAGGGATATCAGCACGAGCGGAAAAAGCGTTTGCCG
TGTTAATGGCAAGCTTGTCACGATTGCTTCGTTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAGGACGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGAGCCGAAGTAGAAAGCGCGCTTCAA
GCATATCAGGAAGGGTACCATCGGTATATGAAGCTGCTTAAAAAGCTAAAACAGCTTTCTGAAAGCGAACAGGAAATGGC
CCATCGCCTGGACCTTATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGCTCGAGCTTAATGAAGATGAACAGCTCC
AAGAAGAGCGCCAGCAAATTTCAAACTTTGAGAAGATCTATGAATCGCTGCAAAATGCATATAACGCGCTTCGCAGTGAG
CAGGGCGGACTGGACTGGGTCGGAATGGCATCAGCGCAGCTCGAAGATATATCCGATATTAACGAACCGCTGAAAAAACT
GTCTGAAAGTGTGTCGAACTCTTACTATCTGCTGGAGGACGCTACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
ATGACCCGGAACGCCTGAATTATATTGAGACGCGTCTTAATGAAATCAAACAGCTGAAACGAAAATACGGTGCAACTGTT
GAGGAGATTTTGGAATACGCCTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAACAGGGACAGCCATCTTCAAAGCGT
GAAGAAGGAGCTTGACTCAGTCGGCAAAGATGTTGCGGTGGAAGCGGCAAATGTTTCACAAATCCGGAAAGTATGGGCGA
AAAAGCTGGCCGATGAGATTCATCGAGAATTAAAAAGCCTCTATATGGAAAAATCAACTTTTGATACGGAATTTAAGATC
AGAACAGCGTCTCGCAATGAGGAGGCGCCGATTGTAAACGGCCAGCCTGTTCAGCTGACTGACCAAGGAATTGATCTGGT
CAAGTTTTTAATTTCAACCAACACAGGCGAGCCTTTGAAATCCCTTTCGAAAGTCGCTTCCGGAGGGGAGTTGTCCCGGG
TGATGCTTGCCATCAAAAGCATTTTTTCCTCACAGCAGGATGTGACGTCGATTATATTCGATGAGGTAGATACCGGTGTA
AGCGGCAGAGTCGCGCAGGCAATCGCTGAGAAGATCCATAAAGTCTCAATAGGATCACAAGTGCTGTGTATTACACACTT
GCCTCAGGTAGCTGCCATGGCCGATACGCATCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACCACGACACGTGTCA
AGCCGCTGTCTAAGCAGGAAAAGGTAGTGGAAATCGGGCGCATGATTGCCGGAGTCGAAGTAACAGACTTGACGAAACGC
CATGCGAAAGAACTTCTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

97.049

100

0.97

Multiple sequence alignment