Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ACCO40_RS12250 Genome accession   NZ_CP167793
Coordinates   2415251..2416054 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus spizizenii strain SHT-15     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2410251..2421054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCO40_RS12220 (ACCO40_12220) - 2411312..2412043 (-) 732 WP_014114340.1 glycerophosphodiester phosphodiesterase -
  ACCO40_RS12225 (ACCO40_12225) - 2412123..2412743 (-) 621 WP_080010088.1 N-acetylmuramoyl-L-alanine amidase -
  ACCO40_RS12230 (ACCO40_12230) - 2412762..2413058 (-) 297 WP_014114342.1 hypothetical protein -
  ACCO40_RS12235 (ACCO40_12235) - 2413383..2413517 (+) 135 WP_003236876.1 hypothetical protein -
  ACCO40_RS12240 (ACCO40_12240) - 2413590..2414708 (+) 1119 WP_072566533.1 NADH-dependent flavin oxidoreductase -
  ACCO40_RS12245 (ACCO40_12245) - 2414925..2415104 (-) 180 WP_268456013.1 hypothetical protein -
  ACCO40_RS12250 (ACCO40_12250) spo0A 2415251..2416054 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ACCO40_RS12255 (ACCO40_12255) spoIVB 2416332..2417612 (-) 1281 WP_014114356.1 SpoIVB peptidase -
  ACCO40_RS12260 (ACCO40_12260) recN 2417786..2419516 (-) 1731 WP_372401633.1 DNA repair protein RecN Machinery gene
  ACCO40_RS12265 (ACCO40_12265) argR 2419552..2420001 (-) 450 WP_014114358.1 arginine repressor ArgR -
  ACCO40_RS12270 (ACCO40_12270) - 2420098..2420943 (-) 846 WP_372401635.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=1039418 ACCO40_RS12250 WP_003226427.1 2415251..2416054(-) (spo0A) [Bacillus spizizenii strain SHT-15]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1039418 ACCO40_RS12250 WP_003226427.1 2415251..2416054(-) (spo0A) [Bacillus spizizenii strain SHT-15]
GTGGAGAAAATTAAAGTTTGTGTTGCTGACGATAATCGAGAGCTGGTAAGCCTGTTGAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGTGTTGCTTATAACGGACAGGAATGCCTGTCGTTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTGGATATTATTATGCCGCATTTGGATGGACTTGCGGTTTTAGAGCGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCTTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGACATATCCGCCAAGTCAGCGGAAATGCCAGCAGCGTGACGCATCGTGCGC
CATCATCGCAAAGCAGCATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCACATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
TGAATTGCTCGGCAGTATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCTAGCCGTGTAGAAA
GAGCGATCCGCCATGCGATCGAAGTGGCATGGAGCAGAGGCAACATTGATTCCATTTCCTCGTTGTTCGGCTATACAGTC
AGTATGACAAAAGCTAAGCCGACAAACTCAGAGTTCATTGCGATGGTTGCGGATAAGCTGAGATTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment