Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   QUF32_RS04875 Genome accession   NZ_AP028128
Coordinates   1024679..1026040 (+) Length   453 a.a.
NCBI ID   WP_143683573.1    Uniprot ID   -
Organism   Vibrio fluvialis strain IDH05335     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1019679..1031040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF32_RS04855 (KKIDH5335_09020) - 1020437..1021096 (+) 660 WP_286236285.1 transposase -
  QUF32_RS04860 (KKIDH5335_09030) - 1021149..1021520 (-) 372 WP_233939517.1 Arm DNA-binding domain-containing protein -
  QUF32_RS04870 (KKIDH5335_09040) uvrB 1022362..1024392 (+) 2031 WP_020431742.1 excinuclease ABC subunit UvrB -
  QUF32_RS04875 (KKIDH5335_09050) luxO 1024679..1026040 (+) 1362 WP_143683573.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  QUF32_RS04880 (KKIDH5335_09060) luxU 1026047..1026385 (+) 339 WP_020327928.1 quorum-sensing phosphorelay protein LuxU -
  QUF32_RS04885 (KKIDH5335_09070) - 1026374..1027264 (-) 891 WP_020431738.1 YvcK family protein -
  QUF32_RS04890 (KKIDH5335_09080) moaA 1027575..1028564 (+) 990 WP_038127045.1 GTP 3',8-cyclase MoaA -
  QUF32_RS04895 (KKIDH5335_09090) moaB 1028636..1029148 (+) 513 WP_286236105.1 molybdenum cofactor biosynthesis protein B -
  QUF32_RS04900 (KKIDH5335_09100) moaC 1029158..1029637 (+) 480 WP_020431735.1 cyclic pyranopterin monophosphate synthase MoaC -
  QUF32_RS04905 (KKIDH5335_09110) moaD 1029634..1029879 (+) 246 WP_020327923.1 molybdopterin synthase sulfur carrier subunit -
  QUF32_RS04910 (KKIDH5335_09120) moaE 1029881..1030336 (+) 456 WP_020327922.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50303.55 Da        Isoelectric Point: 5.5480

>NTDB_id=103938 QUF32_RS04875 WP_143683573.1 1024679..1026040(+) (luxO) [Vibrio fluvialis strain IDH05335]
MVEDTASVAALYRSYLTPLEIDINIVGTGREAIESIAHREPDLILLDLRLPDMTGMDVLHAVKQRSPDVPVIFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEADNPGNQNYQGFIGSSQTMLAVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLG
YMSKEEGKGFVRLAPEVVERFKQYEWPGNVRQLQNVLRNVVVLNEGREITLNMLPPPLNQPSESIISVPKASVAPVSVHE
IFPLWMTEKQAIEKAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNEKVQEKEK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=103938 QUF32_RS04875 WP_143683573.1 1024679..1026040(+) (luxO) [Vibrio fluvialis strain IDH05335]
ATGGTCGAAGATACGGCGTCAGTGGCGGCGTTATATCGCTCGTACCTGACTCCGCTAGAGATCGATATCAACATCGTCGG
AACTGGGCGTGAAGCGATCGAAAGTATCGCGCATCGCGAACCGGATCTTATTCTACTCGATCTGCGCCTGCCGGACATGA
CCGGTATGGACGTATTACACGCTGTTAAACAGCGCTCGCCGGATGTACCTGTGATTTTTATGACCGCACATGGTTCAATT
GATACTGCGGTTGAGGCGATGCGTCATGGCGCACAGGATTTCCTCATCAAACCGTGTGAAGCAGACCGCTTACGTGTCAC
GGTAAACAATGCGATTCGTAAAGCCAGCAAGCTGAAGAATGAAGCTGACAACCCAGGTAACCAGAATTACCAAGGCTTTA
TCGGCAGTAGTCAAACCATGCTTGCGGTTTATCGCACCATTGACTCTGCGGCCAGCAGTAAGGCAAGTATCTTCATTACT
GGAGAAAGCGGTACGGGTAAAGAGGTGTGCGCGGAAGCGATTCACGCCGCCAGTCGACGCGGCGACAAACCGTTCATCGC
GATTAACTGTGCCGCGATTCCTAAAGATCTGATTGAAAGTGAATTGTTTGGTCATGTTAAAGGCGCATTTACTGGCGCAG
CAACGGATCGCCAGGGCGCTGCAGAATTGGCCGACGGCGGCACTCTGTTCCTCGATGAGCTGTGCGAAATGGATCTCGAT
CTGCAGACTAAATTGTTGCGCTTTATTCAGACCGGCACCTTCCAGAAAGTCGGCTCGTCAAAAATGAAAAGTGTGGATGT
GCGTTTTGTCTGCGCGACCAACCGTGACCCATGGAAAGAAGTGCAGGAAGGCCGTTTCCGTGAAGATTTGTACTACCGTC
TGTACGTCATTCCACTGCATCTGCCGCCTTTACGTGAGCGTGGCGATGATGTCATTGAAATTGCCTATTCGCTGCTGGGC
TATATGTCGAAAGAAGAGGGCAAAGGCTTTGTCCGTCTCGCTCCGGAAGTCGTAGAACGTTTTAAACAATACGAATGGCC
AGGTAATGTGCGTCAGCTGCAGAACGTACTGCGCAACGTTGTGGTGCTGAATGAAGGGCGTGAAATCACCCTGAATATGC
TGCCACCACCGCTCAATCAGCCAAGCGAAAGCATCATCAGTGTACCGAAGGCTAGTGTCGCGCCCGTATCGGTTCACGAA
ATCTTCCCGCTGTGGATGACGGAAAAGCAAGCCATTGAGAAAGCGATTGAAGCCTGCGATGGCAATATTCCGCGTGCTGC
CGGTTATCTGGACGTCAGCCCATCCACTATTTATCGCAAACTGCAAACCTGGAACGAGAAGGTGCAGGAAAAGGAAAAGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

91.48

98.455

0.901

Multiple sequence alignment