Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ACDI99_RS13910 Genome accession   NZ_CP167783
Coordinates   2916791..2917501 (-) Length   236 a.a.
NCBI ID   WP_005404626.1    Uniprot ID   A0A2T1J168
Organism   Acinetobacter radioresistens strain E3263934     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2911791..2922501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDI99_RS13890 (ACDI99_13890) aroB 2912377..2913462 (-) 1086 WP_372409696.1 3-dehydroquinate synthase -
  ACDI99_RS13895 (ACDI99_13895) aroK 2913481..2914032 (-) 552 WP_005024215.1 shikimate kinase AroK -
  ACDI99_RS13900 (ACDI99_13900) pilQ 2914069..2916249 (-) 2181 WP_005024212.1 type IV pilus secretin PilQ Machinery gene
  ACDI99_RS13905 (ACDI99_13905) pilP 2916267..2916794 (-) 528 WP_005018049.1 pilus assembly protein PilP Machinery gene
  ACDI99_RS13910 (ACDI99_13910) comO 2916791..2917501 (-) 711 WP_005404626.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACDI99_RS13915 (ACDI99_13915) pilN 2917498..2918157 (-) 660 WP_005018044.1 PilN domain-containing protein Machinery gene
  ACDI99_RS13920 (ACDI99_13920) pilM 2918157..2919215 (-) 1059 WP_005018042.1 pilus assembly protein PilM Machinery gene
  ACDI99_RS13925 (ACDI99_13925) ponA 2919377..2921923 (+) 2547 WP_005024203.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26946.23 Da        Isoelectric Point: 4.4700

>NTDB_id=1039375 ACDI99_RS13910 WP_005404626.1 2916791..2917501(-) (comO) [Acinetobacter radioresistens strain E3263934]
MSREEFDDLNQEDAKPAKRKMTLEAFLQQFNTLDTHNYGSWPFSVKLTCWIFLFLLVCAIGYFLAIRPKLEAISNAQAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNEQLEQLPKETEIPGLVEDINVAGVSSGLKFKNIRLESEIRQEFFIEQP
IDIQATGDYHAFGSFVSTIAALPRIVTLHDFEITSTQAQNSDIPEVNYAVKAKTYRYVGNNEQPNTTDTPAGGQPQ

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1039375 ACDI99_RS13910 WP_005404626.1 2916791..2917501(-) (comO) [Acinetobacter radioresistens strain E3263934]
ATGAGTCGTGAAGAATTTGATGATTTAAACCAGGAAGATGCTAAACCTGCTAAAAGAAAAATGACGCTAGAAGCCTTCCT
GCAACAGTTTAATACTCTGGATACACATAATTACGGCAGCTGGCCTTTTTCAGTCAAACTGACCTGCTGGATATTTCTGT
TTCTGCTGGTTTGTGCAATTGGCTATTTTTTAGCAATTCGCCCCAAACTTGAAGCTATTTCTAATGCGCAGGCACAAGAA
CAGAATCTGTTAAACGAGTTTCGTGAAAAGGACTCTAAACTGCGTAACTTACAGCAATACCAAGCACAACTACAGGAAAT
GGAAGCGAATTTTAATGAACAACTGGAACAGTTGCCTAAAGAAACCGAGATTCCTGGACTGGTTGAAGATATTAACGTTG
CAGGAGTAAGTTCTGGCCTGAAATTTAAAAATATTCGTCTGGAAAGTGAAATTCGGCAGGAATTCTTTATTGAACAGCCA
ATTGATATTCAGGCAACAGGTGATTATCATGCCTTTGGTTCTTTTGTGAGCACTATTGCGGCGCTTCCACGAATTGTAAC
CCTGCATGACTTTGAAATTACCAGTACACAGGCGCAGAACTCAGATATTCCAGAAGTAAATTATGCGGTGAAAGCTAAAA
CATACCGATATGTCGGTAATAATGAGCAGCCAAATACTACGGATACCCCAGCAGGAGGGCAGCCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T1J168

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

67.755

100

0.703
  pilO Acinetobacter baumannii D1279779

71.946

93.644

0.674

Multiple sequence alignment