Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACDI99_RS13505 Genome accession   NZ_CP167783
Coordinates   2831804..2832439 (+) Length   211 a.a.
NCBI ID   WP_372409650.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain E3263934     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2826804..2837439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDI99_RS13495 (ACDI99_13495) - 2828939..2829748 (-) 810 WP_034669899.1 NAD-dependent epimerase/dehydratase family protein -
  ACDI99_RS13500 (ACDI99_13500) recG 2829772..2831817 (+) 2046 WP_034669898.1 ATP-dependent DNA helicase RecG -
  ACDI99_RS13505 (ACDI99_13505) comF 2831804..2832439 (+) 636 WP_372409650.1 ComF family protein Machinery gene
  ACDI99_RS13510 (ACDI99_13510) - 2832436..2832837 (-) 402 WP_101159814.1 NUDIX domain-containing protein -
  ACDI99_RS13515 (ACDI99_13515) - 2832847..2833428 (-) 582 WP_005404596.1 TIGR00730 family Rossman fold protein -
  ACDI99_RS13520 (ACDI99_13520) - 2833593..2834606 (+) 1014 WP_005018301.1 magnesium and cobalt transport protein CorA -
  ACDI99_RS13525 (ACDI99_13525) - 2834641..2834931 (-) 291 WP_119879616.1 lipid asymmetry maintenance protein MlaB -
  ACDI99_RS13530 (ACDI99_13530) - 2834955..2835593 (-) 639 WP_005018297.1 phospholipid-binding protein MlaC -
  ACDI99_RS13535 (ACDI99_13535) - 2835611..2836273 (-) 663 WP_119879617.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ACDI99_RS13540 (ACDI99_13540) mlaE 2836273..2837049 (-) 777 WP_017400883.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24352.47 Da        Isoelectric Point: 9.2064

>NTDB_id=1039371 ACDI99_RS13505 WP_372409650.1 2831804..2832439(+) (comF) [Acinetobacter radioresistens strain E3263934]
MPMFNPSSLLRPISRLLPCPLCSSSLQMQHGVCHDCWEQLPWYRQTVERQELNIHVAYGYQYPIDRIIQQFKYEQQLNYQ
QLLTASILTLRLPKVQAIVPMPISTERLIERGYNQSLVIAKILARELNVPVWQPVIRLAQHSQKGLSRLERLNQIEMQFQ
PILTERRRYRRVLMLDDVVTTGSSLSALAQALTRLGCQHIFAACIAAAETA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1039371 ACDI99_RS13505 WP_372409650.1 2831804..2832439(+) (comF) [Acinetobacter radioresistens strain E3263934]
ATGCCTATGTTTAACCCATCTTCTTTACTCAGACCTATCTCACGGCTACTACCCTGCCCGCTTTGTAGCAGCAGTTTGCA
AATGCAGCATGGGGTTTGTCATGATTGCTGGGAACAGCTGCCTTGGTATCGGCAGACTGTAGAACGACAAGAATTAAACA
TTCATGTTGCCTATGGCTATCAATATCCAATAGATCGCATCATCCAGCAGTTTAAATATGAGCAGCAGTTAAACTATCAG
CAGCTACTGACTGCATCGATACTAACCCTCAGGTTACCTAAAGTTCAGGCCATTGTGCCTATGCCCATATCAACCGAACG
TTTAATTGAACGCGGCTATAATCAGTCACTGGTCATTGCAAAAATTCTAGCCCGTGAGCTGAATGTTCCGGTCTGGCAAC
CTGTAATTCGGCTGGCTCAGCATTCGCAAAAAGGCTTATCGCGACTCGAACGTCTGAACCAGATTGAAATGCAATTTCAG
CCGATCCTCACCGAACGCCGGCGTTACCGCCGGGTATTAATGCTAGACGATGTAGTGACTACAGGCAGCTCACTTTCGGC
CTTGGCTCAAGCCCTGACCCGGCTGGGCTGCCAGCATATTTTTGCTGCGTGTATTGCAGCCGCAGAAACAGCCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(115-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

55.924

100

0.559
  comF Acinetobacter baumannii D1279779

55.924

100

0.559

Multiple sequence alignment