Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ACDJ02_RS15295 Genome accession   NZ_CP167777
Coordinates   3236081..3236794 (-) Length   237 a.a.
NCBI ID   WP_004991755.1    Uniprot ID   N9DJW9
Organism   Acinetobacter ursingii strain E5131942     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3231081..3241794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDJ02_RS15275 (ACDJ02_15275) aroB 3231668..3232750 (-) 1083 WP_348883767.1 3-dehydroquinate synthase -
  ACDJ02_RS15280 (ACDJ02_15280) aroK 3232783..3233325 (-) 543 WP_004991750.1 shikimate kinase AroK -
  ACDJ02_RS15285 (ACDJ02_15285) pilQ 3233362..3235494 (-) 2133 WP_010588590.1 type IV pilus secretin PilQ family protein Machinery gene
  ACDJ02_RS15290 (ACDJ02_15290) pilP 3235557..3236081 (-) 525 WP_004991753.1 pilus assembly protein PilP Machinery gene
  ACDJ02_RS15295 (ACDJ02_15295) pilO 3236081..3236794 (-) 714 WP_004991755.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACDJ02_RS15300 (ACDJ02_15300) pilN 3236791..3237429 (-) 639 WP_004991757.1 PilN domain-containing protein Machinery gene
  ACDJ02_RS15305 (ACDJ02_15305) pilM 3237429..3238487 (-) 1059 WP_372375485.1 pilus assembly protein PilM Machinery gene
  ACDJ02_RS15310 (ACDJ02_15310) ponA 3238651..3241224 (+) 2574 WP_262476553.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26691.45 Da        Isoelectric Point: 4.9910

>NTDB_id=1039334 ACDJ02_RS15295 WP_004991755.1 3236081..3236794(-) (pilO) [Acinetobacter ursingii strain E5131942]
MSRDEFNELDPEVAAPKKKKLTLDKFLQQFNTLDMNNYGGWPLSVKITCWIFIFFAVCALGYFLAIKPKLDAISTAQAQE
QNLLNEFREKDSKLRNLQQYQVQLQEMESNFNQQLAQLPKETEIPSLVEDINMTGVNSGLKFKNIRLENEVRQEFFIEQP
ISIDATGDYHAFGAFVSAIAALPRIVTLHDFVIEGKQVKEKADIPEISYSVKAKTYRYIGADDQASGASAPVAAGAK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1039334 ACDJ02_RS15295 WP_004991755.1 3236081..3236794(-) (pilO) [Acinetobacter ursingii strain E5131942]
ATGAGTCGTGATGAATTCAATGAACTAGATCCTGAAGTTGCTGCACCAAAGAAAAAGAAATTGACCTTAGATAAATTTCT
TCAGCAGTTTAATACGCTGGATATGAATAACTACGGGGGATGGCCACTCTCAGTTAAGATTACCTGCTGGATTTTTATTT
TCTTCGCCGTCTGTGCTTTGGGCTATTTTTTAGCCATTAAGCCTAAACTGGATGCGATCTCAACAGCTCAGGCACAAGAG
CAGAATTTGCTCAACGAGTTTCGTGAAAAGGATTCAAAATTACGTAACTTGCAGCAATATCAGGTTCAGTTGCAGGAAAT
GGAATCGAATTTTAACCAGCAATTGGCGCAACTTCCAAAAGAAACAGAAATTCCAAGTCTGGTTGAAGATATCAATATGA
CAGGGGTAAATTCTGGACTTAAATTTAAAAATATCCGTCTTGAAAATGAAGTTAGACAAGAGTTCTTTATTGAACAGCCG
ATCTCGATTGATGCGACTGGGGATTATCATGCCTTTGGTGCATTTGTAAGCGCAATTGCGGCATTGCCTCGTATTGTGAC
TTTGCATGATTTTGTCATTGAAGGAAAGCAGGTTAAAGAAAAAGCAGATATTCCTGAAATTAGTTATTCCGTGAAAGCAA
AAACCTATCGATATATAGGTGCGGATGATCAGGCGAGTGGTGCTTCTGCTCCAGTTGCAGCGGGGGCAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9DJW9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

75.527

100

0.755
  comO Acinetobacter baylyi ADP1

76.087

97.046

0.738

Multiple sequence alignment