Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   ACDJ02_RS10080 Genome accession   NZ_CP167777
Coordinates   2095659..2096336 (-) Length   225 a.a.
NCBI ID   WP_151724345.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain E5131942     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2090659..2101336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDJ02_RS10050 (ACDJ02_10050) - 2090973..2091410 (-) 438 WP_034697759.1 SRPBCC family protein -
  ACDJ02_RS10055 (ACDJ02_10055) tadA 2091523..2092044 (-) 522 WP_004989424.1 tRNA adenosine(34) deaminase TadA -
  ACDJ02_RS10060 (ACDJ02_10060) - 2092048..2093172 (-) 1125 WP_004989425.1 enoyl-CoA hydratase/isomerase family protein -
  ACDJ02_RS10065 (ACDJ02_10065) ung 2093169..2093882 (-) 714 WP_004997171.1 uracil-DNA glycosylase -
  ACDJ02_RS10070 (ACDJ02_10070) - 2093930..2094526 (-) 597 WP_151831624.1 6-carboxytetrahydropterin synthase -
  ACDJ02_RS10075 (ACDJ02_10075) gspK 2094688..2095653 (-) 966 WP_151788591.1 type II secretion system minor pseudopilin GspK -
  ACDJ02_RS10080 (ACDJ02_10080) xcpW 2095659..2096336 (-) 678 WP_151724345.1 GspJ family type II secretion system protein Machinery gene
  ACDJ02_RS10085 (ACDJ02_10085) xcpV 2096600..2096953 (-) 354 WP_252511492.1 type II secretion system protein GspI Machinery gene
  ACDJ02_RS10090 (ACDJ02_10090) - 2097570..2098070 (-) 501 WP_252511491.1 type II secretion system protein GspH -
  ACDJ02_RS10095 (ACDJ02_10095) - 2098318..2098926 (-) 609 WP_004989445.1 TetR/AcrR family transcriptional regulator -
  ACDJ02_RS10100 (ACDJ02_10100) - 2098970..2099743 (-) 774 WP_151788592.1 TatD family hydrolase -
  ACDJ02_RS10105 (ACDJ02_10105) - 2099760..2100101 (-) 342 WP_004989449.1 PilZ domain-containing protein -
  ACDJ02_RS10110 (ACDJ02_10110) - 2100114..2101082 (-) 969 WP_004989450.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25368.56 Da        Isoelectric Point: 4.9681

>NTDB_id=1039320 ACDJ02_RS10080 WP_151724345.1 2095659..2096336(-) (xcpW) [Acinetobacter ursingii strain E5131942]
MVELLVAIAIFAVLSALGWKVFDYLIKTKDRNAQHEEQLFILQDAYQQILRDTLQIIPLTANMNGQTRPALSLNNNVLQF
SKAGVTDPLGQGVSPYERIEYRYDASQKVVYRLKYSDLNLPNTAQPQSSILLKNVEQFQINVLNPEALNQWPDASLDFTQ
TQNLKLLPAGLKIDVTIAGTEYEWIYNLLDTKAIVLKQQQNDASSNNNNSTNNTNHNSTNQTGQN

Nucleotide


Download         Length: 678 bp        

>NTDB_id=1039320 ACDJ02_RS10080 WP_151724345.1 2095659..2096336(-) (xcpW) [Acinetobacter ursingii strain E5131942]
TTGGTTGAGCTTTTGGTCGCGATTGCGATATTTGCAGTATTATCTGCATTAGGTTGGAAAGTTTTTGATTATCTCATCAA
GACTAAAGATCGAAATGCTCAGCACGAAGAGCAACTTTTTATTTTACAAGACGCATATCAGCAAATTTTGCGAGATACTT
TACAGATCATTCCACTTACGGCAAATATGAATGGGCAAACGCGTCCAGCATTATCACTGAATAATAACGTACTTCAGTTT
AGCAAAGCTGGTGTGACTGATCCATTAGGGCAGGGGGTGTCGCCCTATGAGCGGATTGAGTATCGTTATGATGCTTCGCA
GAAAGTAGTTTATCGCTTAAAATATTCAGATTTGAATCTACCCAATACTGCACAGCCTCAATCCAGTATTCTATTGAAAA
ATGTGGAACAGTTTCAAATTAATGTATTGAATCCTGAAGCTTTAAATCAATGGCCTGATGCAAGTTTAGATTTTACTCAG
ACTCAAAATTTAAAACTTCTGCCCGCAGGTTTAAAAATTGATGTCACCATTGCAGGAACTGAATATGAATGGATTTACAA
CTTATTGGATACTAAAGCTATTGTTTTAAAGCAGCAACAAAATGATGCATCAAGCAACAATAATAATTCAACGAATAATA
CTAATCACAATTCCACTAATCAGACTGGACAGAATTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(51-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

65.957

83.556

0.551

Multiple sequence alignment